Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	5,768,090	Δ1 bp	6.4%	coding (2782/4716 nt)	PP_5060 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	5,768,090	0	C	.	6.4%	198.6 / 6.6	62	coding (2782/4716 nt)	PP_5060	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base C (28/30);  new base . (2/2);  total (30/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.23e-01

TTACCGGATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAGGCTGACTCGGTAGA  >  NC_002947/5767946‑5768233                                                                                                                                                 |                                                                                                                                                ttACCGGATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCaa                                                                                                                                              <  4:163934/148‑1 (MQ=255)  tACCGGATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACt                                                                                                                                            >  3:30342/1‑149 (MQ=255)   aCCGGATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTc                                                                                                                                           >  8:135755/1‑149 (MQ=255)     cGGATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGc                                                                                                                                         >  3:34522/1‑149 (MQ=255)       gATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCg                                                                                                                                       <  7:170674/149‑1 (MQ=255)             gCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAAc                                                                                                                                             >  7:56944/1‑137 (MQ=255)               aaaCCGACAATCTGCTCGCTAAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGAt                                                                                                                                >  3:184476/1‑148 (MQ=255)                 aCCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCTCGGGCCAACTCGCCGGAGCGATCAt                                                                                                                             >  1:286100/1‑149 (MQ=255)                 aCCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCAt                                                                                                                             >  8:316886/1‑149 (MQ=255)                         tCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCg                                                                                                                     >  2:81891/1‑149 (MQ=255)                           tGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTg                                                                                                                   >  3:62649/1‑149 (MQ=255)                                gctcAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCTTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAgc                                                                                                              >  2:311898/1‑149 (MQ=255)                                gctcAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCaa                                                                                                                <  1:187284/147‑1 (MQ=255)                                    aaCGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGcgcg                                                                                                           >  7:286087/1‑148 (MQ=255)                                     aCGCGTTGAAATCCTTCGTGGCATCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGaa                                                                                                         <  8:286087/149‑1 (MQ=255)                                     aCGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGaa                                                                                                         <  4:62649/149‑1 (MQ=255)                                     aCGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGaa                                                                                                         >  4:52076/1‑149 (MQ=255)                                     aCGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGaa                                                                                                         <  7:135755/149‑1 (MQ=255)                                     aCGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGaa                                                                                                         <  3:335094/149‑1 (MQ=255)                                          ttGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAattatt                                                                                                    <  4:106061/149‑1 (MQ=255)                                          ttGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAattatt                                                                                                    >  1:1663/1‑149 (MQ=255)                                           tGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCATTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGG‑CAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAattatt                                                                                                    >  5:269325/1‑147 (MQ=255)                                           tGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGACTCAGCCTTGTCGATCGGCACGTCAAGCTTCTTGCGCAATCGCTCGCGGG‑CAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAattatt                                                                                                    >  5:264699/1‑147 (MQ=255)                                             aaaTCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGa                                                                                                  <  7:316886/148‑1 (MQ=255)                                               aTCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGcgcg                                                                                                           <  6:184434/137‑1 (MQ=255)                                               aTCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGcgcg                                                                                                           >  5:184434/1‑137 (MQ=255)                                                   ttCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGGGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCa                                                                                           <  4:184476/149‑1 (MQ=255)                                                     cGTGGCAGCCTCTGCGGCCAGTATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCTTAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATCGAGGTGCCa                                                                                           <  1:307171/147‑1 (MQ=255)                                                       tGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACa                                                                                       <  6:85139/149‑1 (MQ=255)                                                          cAGCCTCTGCGGCCAGGATAAGCCGCTCTCTCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTg                                                                                    <  4:302140/149‑1 (MQ=255)                                                                   cGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTcgc                                                                             <  1:372172/147‑1 (MQ=255)                                                                    ggCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCa                                                                          >  6:250258/1‑149 (MQ=255)                                                                      ccAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCAt                                                                         >  1:151176/1‑148 (MQ=255)                                                                        aGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAg                                                                      <  7:186072/149‑1 (MQ=255)                                                                          gATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAgg                                                                     >  5:265722/1‑148 (MQ=255)                                                                                ccGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGcc                                                              <  6:265722/149‑1 (MQ=255)                                                                                ccGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGcc                                                              >  5:175992/1‑149 (MQ=255)                                                                                   ctctATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCaa                                                           >  6:339186/1‑149 (MQ=255)                                                                                      tATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCg                                                        >  5:346519/1‑149 (MQ=255)                                                                                       aTCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGt                                                       >  8:251884/1‑149 (MQ=255)                                                                                        tctcGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTg                                                      >  6:368040/1‑149 (MQ=255)                                                                                          tcGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGcc                                                    >  1:199621/1‑149 (MQ=255)                                                                                            ggCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAattatt                                                                                                    <  7:177034/99‑1 (MQ=255)                                                                                            ggCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAattatt                                                                                                    >  8:177034/1‑99 (MQ=255)                                                                                            ggCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTg                                                      <  4:30342/145‑1 (MQ=255)                                                                                            ggCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTg                                                      <  2:1663/145‑1 (MQ=255)                                                                                            ggCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTg                                                      <  6:175992/145‑1 (MQ=255)                                                                                            ggCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGt                                                  >  3:370251/1‑149 (MQ=255)                                                                                                     cTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAat                                                                                                        >  2:83422/1‑86 (MQ=255)                                                                                                     cTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTAGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAat                                                                                                        <  1:83422/86‑1 (MQ=255)                                                                                                            aTCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCg                                  <  6:164313/149‑1 (MQ=255)                                                                                                                gCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAAc                              <  4:34522/149‑1 (MQ=255)                                                                                                                 cccGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACg                             <  3:52076/149‑1 (MQ=255)                                                                                                                     tCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGc                         >  6:189263/1‑149 (MQ=255)                                                                                                                     tCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGc                         <  7:251884/149‑1 (MQ=255)                                                                                                                             cttGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATc                   <  1:81891/147‑1 (MQ=255)                                                                                                                             cttGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCa                  <  5:250258/148‑1 (MQ=255)                                                                                                                                gcgcAATCGCTCGCGTG‑CAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAGGc              <  6:264699/148‑1 (MQ=255)                                                                                                                                gcgcAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAgg               <  5:368040/148‑1 (MQ=255)                                                                                                                                gcgcAATCGCTCGCGGG‑CAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAGGc              <  6:269325/148‑1 (MQ=255)                                                                                                                                     aTCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAGGCTGACt         <  2:286100/149‑1 (MQ=255)                                                                                                                                            gcgGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAGGCTGACTCGGTAGa  >  6:71098/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                TTACCGGATCACGCAAACCGACAATCTGCTCGCTCAACGCGTTGAAATCCTTCGTGGCAGCCTCTGCGGCCAGGATAAGCCGCTCTATCTCGGCCTGAGCCTTGGCGATCGGCCCGTCAAGCTTCTTGCGCAATCGCTCGCGGGCCAACTCGCCGGAGCGATCATTGCCACCGTGCAAGCGCGAATTATTGAGGTGCCAGACATTGCCGTCGCGCATCAGGTATGGCCCAACCGTGCCGTCCGGACCAATGATGCGAAACGCTGCGTTATCAAGGCTGACTCGGTAGA  >  NC_002947/5767946‑5768233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑