Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,795,651 Δ1 bp 100% coding (464/504 nt) PP_1600 → Skp‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,795,6510T.100.0% 152.7 / NA 34coding (464/504 nt)PP_1600Skp‑like protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (17/17);  total (17/17)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACATCACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGG  >  NC_002947/1795518‑1795792
                                                                                                                                      |                                                                                                                                             
gTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATc                                                                                                                               <  8:250560/149‑1 (MQ=255)
   gCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCaa                                                                                                                                     <  1:324905/140‑1 (MQ=255)
   gCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCaa                                                                                                                                     >  2:324905/1‑140 (MQ=255)
    cTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAgc                                                                                                                           <  3:68416/149‑1 (MQ=255)
       aTCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCa                                                                                                                        >  6:242681/1‑149 (MQ=255)
         cgcgACATGCTTAAGCAACTGAAGGCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCAt                                                                                                                       <  7:272313/148‑1 (MQ=255)
                     aaGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGCCCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGt                                                                                                          >  3:151383/1‑149 (MQ=255)
                         aaCTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGat                                                                                                      <  8:181048/149‑1 (MQ=255)
                            tGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CAGCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGatat                                                                                                    >  5:326628/1‑148 (MQ=255)
                                              gTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCt                                                                                  <  3:75141/148‑1 (MQ=255)
                                                  tGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGtgtg                                                                                             >  6:14165/1‑133 (MQ=255)
                                                  tGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGtgtg                                                                                             <  5:14165/133‑1 (MQ=255)
                                                   gTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGc                                                                              <  3:192938/147‑1 (MQ=255)
                                                   gTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGc                                                                              >  4:192938/1‑147 (MQ=255)
                                                    tCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGtt                                                                                                         >  5:48221/1‑119 (MQ=255)
                                                    tCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGtt                                                                                                         <  6:48221/119‑1 (MQ=255)
                                                            gTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCAAAGTCATCGAGCGCATGTACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGcc                                                                     >  8:331614/1‑147 (MQ=255)
                                                                tCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCATGCGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAgg                                                                 >  1:274859/1‑148 (MQ=255)
                                                                  aagacgGGCGGCTAAGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTAc                                                              <  8:246256/148‑1 (MQ=255)
                                                                       gggCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAg                                                        <  2:11750/149‑1 (MQ=255)
                                                                         gcggcTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGCCA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGCCGCTAGGCCAGCTGGCCGAGGTACTCGgcgc                                                       >  4:321277/1‑148 (MQ=255)
                                                                                  aCCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAg                                             <  5:242681/149‑1 (MQ=255)
                                                                                   ccTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGt                                                                                                                                   >  7:79470/1‑62 (MQ=255)
                                                                                   ccTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGt                                                                                                                                   <  8:79470/62‑1 (MQ=255)
                                                                                       gTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGc                                         <  2:274859/148‑1 (MQ=255)
                                                                                             gAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAgg                                   <  4:151383/148‑1 (MQ=255)
                                                                                                         gTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTAc                      >  6:5764/1‑149 (MQ=255)
                                                                                                         gTCAT‑CGATGTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAAATTAc                      >  3:126953/1‑149 (MQ=255)
                                                                                                                   gTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAg                                    <  6:221375/126‑1 (MQ=255)
                                                                                                                   gTCAAACCTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAg                                    >  5:221375/1‑126 (MQ=255)
                                                                                                                          cTCAGTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTAGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTg      >  6:174560/1‑149 (MQ=255)
                                                                                                                              gTACGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGAGACCATGACGCTAGGCCAGCTGGCGGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGCGATGGCCACCTTCCagg  >  6:161427/1‑149 (MQ=255)
                                                                                                                                aCGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTc                                                >  2:36498/1‑101 (MQ=255)
                                                                                                                                aCGACA‑CACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTc                                                <  1:36498/101‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                             
GTTGCTGATCGCGACATGCTCAAGCAACTGAAGCCGAAGCTGGATGGTGCTGTCGAGGAAGTGATCAAGAAGGGCGGCTACGACCTGGTCCTCGAGCGTGGTGCGGTCAT‑CGATGTCAAACCTCAGTACGACATCACCCGCCAAGTCATCGAGCGCATGAACCAAGCCCGTTGATATGAGTGTGACCATGACGCTAGGCCAGCTGGCCGAGGTACTCGGAGCTACCCTCAAGGGGCCCGAGGCGCTGCAGATTACCGGGTTGGCCACCTTGCAGG  >  NC_002947/1795518‑1795792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑