| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,566,947 | Δ1 bp | 9.9% | coding (5/1932 nt) | pctB ← | methyl‑accepting chemotaxis protein PctB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,566,947 | 0 | C | . | 9.9% | 220.0 / 18.1 | 71 | coding (5/1932 nt) | pctB | methyl‑accepting chemotaxis protein PctB |
| Reads supporting (aligned to +/- strand): ref base C (34/30); new base . (4/3); total (38/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
TGGTATTGCGTTGCAGGTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGC > NC_002947/2566801‑2567094 | tGGTATTGCGTTGCAGGTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTc < 2:193177/149‑1 (MQ=255) cAGGTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCg > 7:152587/1‑149 (MQ=255) cAGGTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCACCGCG‑TCATGAGCGCGCTGc < 1:371506/148‑1 (MQ=255) ggTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCggg < 1:235304/149‑1 (MQ=255) ggTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCggg < 2:196246/149‑1 (MQ=255) gTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGAGCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCgggg > 4:6522/1‑149 (MQ=255) tCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCGTa > 6:250040/1‑149 (MQ=255) tCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTa > 5:71342/1‑149 (MQ=255) gCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGAcc > 3:247153/1‑145 (MQ=255) tGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGatat > 8:129606/1‑149 (MQ=255) gAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATc > 2:115857/1‑149 (MQ=255) gAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATc > 5:355303/1‑149 (MQ=255) aaCAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCg > 1:173255/1‑149 (MQ=255) aCAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCgg > 5:251375/1‑149 (MQ=255) aCAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCgg < 8:344189/149‑1 (MQ=255) aCAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCgg > 3:141244/1‑149 (MQ=255) gCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGa < 6:251375/149‑1 (MQ=255) aaaTGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAgg < 4:247153/149‑1 (MQ=255) ccAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTaa < 7:232783/149‑1 (MQ=255) cAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAggg > 7:229662/1‑144 (MQ=255) cAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAggg < 8:229662/144‑1 (MQ=255) cAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTaaa < 8:152587/149‑1 (MQ=255) cAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTaa > 6:304501/1‑148 (MQ=255) cAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTaa > 8:234151/1‑148 (MQ=255) aaaaCCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCga > 1:205425/1‑127 (MQ=255) aaaaCCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCga < 2:205425/127‑1 (MQ=255) cACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCG‑TCATGa < 4:346212/97‑1 (MQ=255) cACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCG‑TCATGa > 3:346212/1‑97 (MQ=255) acgacgCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGa < 7:129606/149‑1 (MQ=255) acgacgCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGa < 1:115857/149‑1 (MQ=255) cgacgCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGaa < 7:234151/149‑1 (MQ=255) gacgCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAggg > 7:31044/1‑135 (MQ=255) gacgCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAggg < 8:31044/135‑1 (MQ=255) gacgCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAg > 8:179184/1‑149 (MQ=255) gccgcAGGCGCTGAGCCGGATCTTGTGGCGAAATTTCAGGGTCAGGTTTCGAGACCTTGAGCCACTGAGGGGAGGGCGCAGCGCGCGCATGA‑CGCGGTGCGGGGCCTTTCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTg < 8:181483/148‑1 (MQ=255) ccgcAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCCGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCgag > 2:130780/1‑116 (MQ=255) cgcAGGCGCTGAGCAGGATCTTGTGTCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCtt < 5:304501/149‑1 (MQ=255) gcAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTa < 8:103365/149‑1 (MQ=255) cAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAg < 1:194672/149‑1 (MQ=255) cAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAg < 1:107109/149‑1 (MQ=255) gcTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGaa > 7:221111/1‑148 (MQ=255) tGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGaa > 5:129141/1‑134 (MQ=255) tGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGaa < 6:129141/134‑1 (MQ=255) aGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTa < 8:221111/149‑1 (MQ=255) ggATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTa > 5:146645/1‑148 (MQ=255) tCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGa > 3:280900/1‑149 (MQ=255) gtgGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGtt > 3:131883/1‑149 (MQ=255) tgGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGttt < 4:141244/149‑1 (MQ=255) tgGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGtt < 6:355303/148‑1 (MQ=255) gCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGTGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTc > 4:239481/1‑148 (MQ=255) gCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGttt > 3:110747/1‑147 (MQ=255) gCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGttt < 4:110747/147‑1 (MQ=255) cGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑AGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCga > 5:266007/1‑149 (MQ=255) tttCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGAGCTTAGGGAAAATTCTTACAGACGTTTCgacggac > 6:268905/1‑149 (MQ=255) ttCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGt > 6:15175/1‑148 (MQ=255) aTGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCAc < 6:71342/148‑1 (MQ=255) tttCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGAtt < 3:125830/96‑1 (MQ=255) tttCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGAtt > 4:125830/1‑96 (MQ=255) tttCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCgacggac > 7:208206/1‑136 (MQ=255) tttCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCgacggac < 8:208206/136‑1 (MQ=255) gagaCCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATcagc < 7:179184/149‑1 (MQ=255) ccAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGa > 4:233659/1‑149 (MQ=255) ccAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGa > 5:122696/1‑149 (MQ=255) cAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGGCACGGATCAGCCAGCTGCTCGAt < 5:268905/149‑1 (MQ=255) aggggagggCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATcagca < 5:15175/149‑1 (MQ=255) ccccgcACCGCG‑TCATGAGCGCGCTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTg > 8:338584/4‑149 (MQ=255) ggCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTg > 4:34528/1‑148 (MQ=255) cccgcACCGCG‑TCATGAGCGCGCTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTAc > 2:331338/3‑92 (MQ=37) cccgcACCGCG‑TCATGAGCGCGCTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTAc < 1:331338/90‑1 (MQ=37) gctctgcgcgcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGGTTGAGGGGTAAAAGATTGAAGTTATTAGGGAAAATTCTTACAGACGTATCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCa < 3:6522/144‑1 (MQ=255) gcgcAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCGTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTg > 6:328943/1‑147 (MQ=255) cgcACCGCG‑TCATGAGCGCGCTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑g > 1:44200/1‑149 (MQ=255) gcgcgcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCctg > 5:389874/1‑149 (MQ=255) cgcgcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCctgc < 2:173255/149‑1 (MQ=255) cgcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCg > 4:178140/1‑93 (MQ=255) cgcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCg < 3:178140/93‑1 (MQ=255) cgcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCctgctg > 5:51852/1‑149 (MQ=255) gcTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGC‑TGCACGCctgctga < 6:122696/149‑2 (MQ=255) | TGGTATTGCGTTGCAGGTAGTCGTTGTAGAGCGTGAACAGGGCAAATGCCAAAACCACGACGCCGCAGGCGCTGAGCAGGATCTTGTGGCGAAATTTCAGGTTCATGTTTCGAGACCTTGAGCCAATGAGGGGAGGGCGCAGCGCGCTCATGA‑CGCGGTGCGGGGCCTATCGACCGAGATATCGGCTTGAGGGGTAAAAGATTGAAGTGCTTAGGGAAAATTCTTACAGACGTTTCGACGGACGGCAGTCACGGATCAGCCAGCTGCTCGATCAGCAGGCGTGCA‑GCCTGCTGC > NC_002947/2566801‑2567094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |