| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,006,842:1 | +A | 5.5% | coding (1034/1791 nt) | PP_3535 ← | gamma‑glutamyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,006,842 | 1 | . | A | 5.5% | 305.5 / 10.0 | 73 | coding (1034/1791 nt) | PP_3535 | gamma‑glutamyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (34/35); new base A (2/2); total (36/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
GGCGCGCTTCATGCTGTGCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTGTAGCACGGTCAC > NC_002947/4006700‑4006984 | ggCGCGCTTCATGCTGTGCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGa < 1:137024/149‑1 (MQ=255) gcgcgcTTCATGCTGTGCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGAt > 3:146521/1‑149 (MQ=255) cgcgcTTCATGCTGTGCTCGCCGATCAGGGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCTATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATc < 3:338358/149‑1 (MQ=255) cgcgcTTCATGCTGTGCTCGCCGATCAGCGCCGCGCGGCAGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGGCAGGTACAGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGAt > 4:338358/1‑148 (MQ=255) cTTCATGCTGTGCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGTCCGGGACGGGCTCGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGTGATCAGGt < 3:101036/149‑1 (MQ=255) aTGCTGTGCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCAc > 8:360499/1‑149 (MQ=255) gtgCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGcc > 5:368996/1‑148 (MQ=255) tgCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCaa < 2:317630/149‑1 (MQ=255) gcgcGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAAc < 8:216982/146‑1 (MQ=255) tCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAAcgg > 6:343958/1‑149 (MQ=255) gCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAAcggc‑g > 3:318137/1‑149 (MQ=255) ccGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAAcggc‑gg < 6:352175/149‑1 (MQ=255) gcgcCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGCCG‑AGGCCGAGCGCCTGGCCTACGCCGATcgc < 2:5970/124‑3 (MQ=25) gcgcCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGCCG‑AGGCCGAGCGCCTGGCCTACGCCGATcgc > 1:5970/1‑122 (MQ=25) gcgcgGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGCCG‑AGGCCGAGCGCCTGGCCTACGCCGATc < 4:280782/117‑1 (MQ=37) gcgcgGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGCCG‑AGGCCGAGCGCCTGGCCTACGCCGATc > 3:280782/1‑117 (MQ=37) cgcgGCTGGCCAGGTAAGCAGAATCGGTCCGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCGCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCgg < 6:257854/149‑1 (MQ=255) cgcgGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCgg < 2:50453/149‑1 (MQ=255) ggCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCa < 8:184951/114‑1 (MQ=255) ggCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCa > 7:184951/1‑114 (MQ=255) gCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCg < 8:136935/149‑1 (MQ=255) gCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCggg < 5:343958/147‑1 (MQ=255) gCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCggg < 1:214038/147‑1 (MQ=255) gCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCggg < 7:360499/147‑1 (MQ=255) gCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGa < 6:368996/149‑1 (MQ=255) ccAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGAc > 3:257796/1‑149 (MQ=255) tAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGt > 3:270900/1‑149 (MQ=255) tAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGt > 3:265922/1‑149 (MQ=255) tCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATAGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCgg > 8:236114/1‑149 (MQ=255) gTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCg > 1:86614/1‑149 (MQ=255) tCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCg > 5:145967/1‑148 (MQ=255) ggCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAgcg < 4:146521/149‑1 (MQ=255) ccTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCt > 2:78390/1‑149 (MQ=255) gACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGc > 3:313126/1‑147 (MQ=255) gACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGc > 7:117290/1‑147 (MQ=255) cGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCgctgc > 6:307810/1‑131 (MQ=255) gggCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGtt < 4:313126/149‑1 (MQ=255) ggCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTg < 6:42609/117‑1 (MQ=255) ggCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTg > 5:42609/1‑117 (MQ=255) cACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCAGTCGCAGCGCTGCCAGGTCGCGTTgcg < 4:257796/149‑1 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCa < 2:227541/130‑1 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTcgc > 1:122931/1‑136 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTcgc < 2:122931/136‑1 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGt > 5:256366/1‑149 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGt < 4:270900/149‑1 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGt < 4:265922/149‑1 (MQ=255) tCGTTGTCGGCCAGGTACTGAGCGCGATCGACGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCa > 1:227541/1‑130 (MQ=255) gTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTgc > 6:235219/1‑149 (MQ=255) ggCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCa < 6:196732/149‑1 (MQ=255) ggTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAgg < 6:36851/77‑1 (MQ=255) ggTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAgg > 5:36851/1‑77 (MQ=255) gTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGt > 3:163959/1‑149 (MQ=255) tACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTc < 1:78390/149‑1 (MQ=255) aGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCa < 7:236114/149‑1 (MQ=255) gcgcGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAg < 2:86614/149‑1 (MQ=255) cgcgATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAgg < 4:318137/149‑1 (MQ=255) cgATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGcc > 1:244344/1‑149 (MQ=255) gATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGcc > 6:235103/1‑148 (MQ=255) aTCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCg < 4:377487/139‑1 (MQ=255) aTCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCg > 3:377487/1‑139 (MQ=255) aTCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCg < 3:97006/139‑1 (MQ=255) aTCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCg > 4:97006/1‑139 (MQ=255) aTCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGccc > 5:38558/1‑148 (MQ=255) cGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAg > 6:214890/1‑149 (MQ=255) gCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGt > 4:188921/1‑149 (MQ=255) tAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTg < 5:214890/149‑1 (MQ=255) aGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCt > 6:385726/1‑147 (MQ=255) aGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCt < 5:385726/147‑1 (MQ=255) cAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCt > 4:148269/1‑143 (MQ=255) cAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCt < 3:148269/143‑1 (MQ=255) ggCGCGCGGCCG‑CCGCGAGCAGGTGCACGGCCAACGGC‑GGGGCTTCCACGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTGTAGCACg < 6:256366/149‑1 (MQ=255) gcTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGAc < 7:345025/59‑1 (MQ=255) gcTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGAc > 8:345025/1‑59 (MQ=255) tcggcct‑cggcGATCAGGTGCACGGCCAACGGCGGGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTGTAGCACg > 1:253663/1‑145 (MQ=255) tcggcct‑cggcGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTGTAGCACg < 2:253663/144‑1 (MQ=255) tcggcct‑cggcGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTGTAGCACGGTcac > 1:217260/1‑149 (MQ=255) | GGCGCGCTTCATGCTGTGCTCGCCGATCAGCGCCGCGCGGCTGGCCAGGTAAGCAGAATCGGTCAGGGCCTTGACCGGGACGGGCACGTAGTCGTTGTCGGCCAGGTACTGAGCGCGATCGGCGTAGGCCAGGCGCTCGGCCT‑CGGCGATCAGGTGCACGGCCAACGGC‑GGGGCTTCCAGGCGGGCCGGGGACGAGGTGGCCAGCGGTCGCAGCGCTGCCAGGTCGCGTTGCGGCGCGGTGCGCTGCACGGCGTCGAGCAGGCCCAAGGTCTGTAGCACGGTCAC > NC_002947/4006700‑4006984 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |