| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,241,962:1 | +T | 7.2% | intergenic (+27/+31) | grxD → / ← bfr‑II | monothiol glutaredoxin/bacterioferritin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,241,962 | 1 | . | T | 7.2% | 324.9 / 18.5 | 83 | intergenic (+27/+31) | grxD/bfr‑II | monothiol glutaredoxin/bacterioferritin |
| Reads supporting (aligned to +/- strand): ref base . (39/38); new base T (4/2); total (43/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.14e-01 | |||||||||||
CTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTC > NC_002947/1241816‑1242106 | cTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑Ga > 7:72360/1‑149 (MQ=255) ggTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACACGC‑GATCAGc > 5:194204/1‑149 (MQ=255) ttaGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGtttttt < 7:255496/147‑1 (MQ=255) tGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCgg < 4:74536/142‑1 (MQ=255) tGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCgg > 3:74536/1‑142 (MQ=255) gCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTAt < 6:344572/149‑1 (MQ=255) cTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCAGC‑GATCAGCGGGTTTTTTTATg > 6:27036/1‑149 (MQ=255) ttGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGc > 4:188323/1‑149 (MQ=255) gcAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAg < 6:194204/149‑1 (MQ=255) ggAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATc > 8:9362/1‑149 (MQ=255) aaTGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGc > 5:324923/1‑149 (MQ=255) tGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGa < 8:72360/149‑1 (MQ=255) gTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGt > 1:173876/1‑128 (MQ=255) gTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGt < 2:173876/128‑1 (MQ=255) ttCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACt < 8:158365/149‑1 (MQ=255) agaAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAg > 3:216979/1‑149 (MQ=255) ggTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGt > 2:215329/1‑149 (MQ=255) aGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTtctc > 6:86541/1‑149 (MQ=255) aGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTtctc > 3:192080/1‑149 (MQ=255) aGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTtct < 5:245005/148‑1 (MQ=255) gCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTtctc > 4:186434/1‑148 (MQ=255) cTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGa < 6:324923/149‑1 (MQ=255) cTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGa < 4:192080/149‑1 (MQ=255) gCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATa > 7:5749/1‑149 (MQ=255) cAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATAc > 6:274834/1‑149 (MQ=255) cAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATAc > 3:5716/1‑149 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATa < 3:40881/143‑1 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATa > 4:40881/1‑143 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc > 5:222997/1‑149 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc > 1:361833/1‑149 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc < 6:222997/149‑1 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc > 4:66142/1‑149 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc > 4:258900/1‑149 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc > 7:268516/1‑149 (MQ=255) ccTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc < 3:186434/149‑1 (MQ=255) aTCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc < 7:174310/145‑1 (MQ=255) aTCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATc > 8:174310/1‑145 (MQ=255) aaGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCg < 4:216979/148‑1 (MQ=255) aaGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGa < 3:258900/149‑1 (MQ=255) aaGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGa > 4:143193/1‑149 (MQ=255) aGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGAt > 5:175307/1‑149 (MQ=255) gACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCa < 3:143193/149‑1 (MQ=255) cgGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGccc < 2:17776/149‑1 (MQ=255) ggCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAAACCGC‑GATCAGAGGGTTTTTTTATGGTGCGAATAGTTACTATTCGCCCATCTGCGACTGCAGGTATTTCTCGATACCGATCTTGTAGATCAGcca > 8:296184/1‑147 (MQ=255) caaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTgg < 5:86541/149‑1 (MQ=255) gaagatcaggcTTCAGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTggg > 3:210498/8‑149 (MQ=255) aaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATgg > 6:64852/1‑72 (MQ=255) aaggccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATgg < 5:64852/72‑1 (MQ=255) gccaaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGttt > 4:183962/1‑149 (MQ=255) caaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGc < 1:230710/101‑1 (MQ=255) caaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGc > 2:230710/1‑101 (MQ=255) caaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTc > 1:123060/1‑148 (MQ=255) aaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTcca < 8:268516/149‑1 (MQ=255) aaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTcca < 3:188323/149‑1 (MQ=255) aaggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTcca < 3:66142/149‑1 (MQ=255) ggcTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTAGTCGATCAGCCCCAGTTGGGTTTccagc < 1:215329/149‑1 (MQ=255) gAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGtt > 1:277734/1‑131 (MQ=255) gAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGtt < 2:277734/131‑1 (MQ=255) ccTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTccagcc < 4:227501/139‑1 (MQ=255) ccTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTccagcc > 3:227501/1‑139 (MQ=255) ccTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAtgtg < 4:5716/149‑1 (MQ=255) ccTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAtgtg > 6:227479/1‑149 (MQ=255) atGATCTTCCTGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGTGTTTTTTTATGGGGCGAATAGTTACTCTTCGACCATCTGCGACTGCAGGTAGTTCTAGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAtgtg < 7:296184/147‑1 (MQ=255) ttCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCg < 8:130875/137‑1 (MQ=255) ttCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCg > 7:130875/1‑137 (MQ=255) cGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTc < 4:210498/148‑1 (MQ=255) cGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCg < 3:183962/149‑1 (MQ=255) aaGCATAAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAt > 5:142220/1‑133 (MQ=255) aaGCATAAAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGAt < 6:142220/133‑1 (MQ=255) gCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCg < 5:274834/149‑1 (MQ=255) cAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGa < 7:9362/149‑1 (MQ=255) aT‑AAAAAAACCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTcc > 5:240983/1‑138 (MQ=255) aT‑AAAAAAACCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTcc < 6:240983/138‑1 (MQ=255) aT‑AAAAAAACCCGC‑GATCAGCGGGGTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGAGACCGAGCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCACCGACTCGAg > 6:11138/1‑149 (MQ=255) aaaaaaCCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGt < 2:294790/91‑1 (MQ=38) aaaaaaCCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCAGCGACTGCAGGTAGTTCTCGATACCGATCTTGt > 1:294790/1‑91 (MQ=37) aaaaaaCCCGC‑GCTCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGa > 5:229547/1‑148 (MQ=255) aaaaaaCCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGa < 5:227479/148‑1 (MQ=255) aaaaaCCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGata > 7:49687/1‑149 (MQ=255) aaaaaCCCGCTGATC‑GCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGata > 8:39196/1‑149 (MQ=255) aaaaaCCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGa < 5:215425/144‑1 (MQ=255) aaaaaCCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGAGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGa > 6:215425/1‑144 (MQ=255) cccGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTc < 2:123060/149‑1 (MQ=255) cgc‑gATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTc > 4:21010/1‑147 (MQ=255) | CTGTGGGTAGCCGGTGAGCTGGTTGGCGGCAGCGACATCATGCTGGAAATGTTCGAGAAGGGTGAGCTGCAAACCCTGATCAAGGACGCGGCTGCCAAGGCCAAGGCTTCTGAAGCCTGATCTTCCGGCAAGCAT‑AAAAAAACCCGC‑GATCAGCGGGTTTTTTTATGGGGCGAATAGTTACTCTTCGCCCATCTGCGACTGCAGGTAGTTCTCGATACCGATCTTGTCGATCAGCCCCAGTTGGGTTTCCAGCCAGTCGATGTGCTCTTCCTCGGACTCGAGGATATCTTC > NC_002947/1241816‑1242106 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |