Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,419,548:1 +C 100% intergenic (‑37/+99) PP_1242 ← / ← PP_1244 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,419,5481.C100.0% 171.6 / NA 51intergenic (‑37/+99)PP_1242/PP_1244hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (23/28);  total (23/28)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTG  >  NC_002947/1419408‑1419671
                                                                                                                                              |                                                                                                                           
gggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTcg                                                                                                                      >  4:171258/1‑149 (MQ=255)
  gATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTcgcg                                                                                                                    <  5:343080/149‑1 (MQ=255)
   aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCgg                                                                                                                   >  5:191400/1‑149 (MQ=255)
   aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCgg                                                                                                                   <  2:321590/149‑1 (MQ=255)
     gCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGTCTGGCCTCTTCGCggg                                                                                                                  <  2:158860/148‑1 (MQ=255)
     gCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCggg                                                                                                                  >  3:147869/1‑148 (MQ=255)
       cGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAc                                                                                                               >  2:138907/1‑149 (MQ=255)
        gggTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAc                                                                                                               >  1:94569/1‑149 (MQ=255)
        gggTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACg                                                                                                              >  7:25069/1‑149 (MQ=255)
           ttCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGccc                                                                                                           <  3:181788/149‑1 (MQ=255)
           ttCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGccc                                                                                                           <  7:116950/149‑1 (MQ=255)
               aTGCGGAACAGCGGGTGAGTGTTGTTTTGGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTc                                                                                                       >  1:213698/1‑149 (MQ=255)
                tGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCACTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCGcc                                                                                                      >  6:206185/1‑149 (MQ=255)
                 gCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTcc                                                                                                      >  4:21097/1‑148 (MQ=255)
                    gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                                                                                  <  8:25069/149‑1 (MQ=255)
                    gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                                                                                  <  8:146337/149‑1 (MQ=255)
                           gggTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtg                                                                                           <  3:171258/149‑1 (MQ=255)
                           gggTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtg                                                                                           <  1:138907/149‑1 (MQ=255)
                            ggTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtgt                                                                                          <  3:99320/149‑1 (MQ=255)
                                   gttgttTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGc                                                                                   >  8:298154/1‑149 (MQ=255)
                                    ttgttTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCg                                                                                  >  2:321818/1‑149 (MQ=255)
                                       ttttCGCCTCGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGa                                                                               <  3:200788/149‑1 (MQ=255)
                                          tCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACg                                                                             <  3:21097/148‑1 (MQ=255)
                                             ccTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTTGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtg                                                                         <  1:321818/149‑1 (MQ=255)
                                             ccTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCg                                                                                  >  6:112382/1‑140 (MQ=255)
                                             ccTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCg                                                                                  <  5:112382/140‑1 (MQ=255)
                                             ccTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCCCGCCCCCACGTTCTGTGCAGTTGGTGACGGcag                                                                         >  1:162127/1‑147 (MQ=255)
                                               ttGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGTGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCCCTCCCACACGTACAGTGCAGTGCGTGACGGCtgtt                                                                       >  5:218637/1‑148 (MQ=255)
                                                 ggTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTgtgg                                                                      <  2:94569/148‑1 (MQ=255)
                                                 ggTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTgtgg                                                                      <  6:114499/148‑1 (MQ=255)
                                                        gCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctct                                                                                                                        <  8:50374/90‑5 (MQ=255)
                                                        gCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctct                                                                                                                        >  7:50374/1‑86 (MQ=255)
                                                          a‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTgtggt                                                                     <  8:222857/140‑1 (MQ=255)
                                                          a‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTgtggt                                                                     >  7:222857/1‑140 (MQ=255)
                                                                  gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTc                                                                                                       >  3:43191/1‑99 (MQ=255)
                                                                  gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTc                                                                                                       <  4:43191/99‑1 (MQ=255)
                                                                  gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCCCAGGTACTGTGCAGTGCGTGACGGCTGTGGTGCCCCTGTGGGAGCgg                                                     >  4:218353/1‑149 (MQ=255)
                                                                  gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgt                                                                        <  7:103180/130‑1 (MQ=255)
                                                                  gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgt                                                                        >  8:103180/1‑130 (MQ=255)
                                                                   ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAc                                                                                                               >  5:303716/1‑90 (MQ=255)
                                                                   ccGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAc                                                                                                               <  6:303716/90‑1 (MQ=255)
                                                                          tggtggGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGccc                                             <  6:191400/149‑1 (MQ=255)
                                                                               gtttgtgttgtgttgGCGGGGGGCATTGTTTGTTTTCCTTGGATTCTGGGTTGCCGGGGGTGGCCTCTTCGCGGGCACGCCCGCTCCCACTGGTACTGTGCTGGGCGTTCCGGCTGTGGTGACCCTGTGGGAGCGGGGGTGCCCGCGaa                                        <  6:218637/144‑1 (MQ=21)
                                                                                      ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                   >  7:269234/1‑131 (MQ=255)
                                                                                      ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                   <  8:269234/131‑1 (MQ=255)
                                                                                      ttgtgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAgg                                    <  7:298154/146‑1 (MQ=255)
                                                                                                 gTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACCCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCGGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGCCCTGCTAAt                      >  4:65985/1‑149 (MQ=37)
                                                                                                  tGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                       <  6:361568/99‑1 (MQ=255)
                                                                                                   gggCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTTCTGTGGAGTGCGTGACGGCTTTGGTGACCCTGTGGGCGCGGGCGTGCCCGCGAAGAGGCCTGACCTGGTAATg                     >  7:233039/1‑148 (MQ=37)
                                                                                                      ctttgttttgttCCCGGGGATTCTGGGTGGCCGGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGGGACCCTGGGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                 <  3:65985/147‑1 (MQ=25)
                                                                                                      cATTGTTTTGTTTCCCTGGATTCTGGGGTGCCTGGGCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGGGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAg                 <  5:206185/149‑1 (MQ=37)
                                                                                                                    ccTGGTTTCTGGGTTGCCTGGGCGGGCCTCTGCGCGGGCACGCCCGCTCCCCCCGTTACTGTGCAGGGCGTGCCGGGTGTGGTGACCCTGTGGTTGGGGGCGGGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCtgt   <  4:147869/149‑1 (MQ=255)
                                                                                                                     cTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTTCTGTGGAGTGCGGGACGGGTGTGGTGAACCGGTGGGAGGGGGCGTGCCCGCGAAGAGGGCTGACCGGCTAATGCAAGGTGTGAGGGGCtgtg  >  1:309029/1‑149 (MQ=25)
                                                                                                                                              |                                                                                                                           
GGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCA‑GGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTG  >  NC_002947/1419408‑1419671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑