New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	15797 =	87 (1.470)	5 (0.090)	5/244	NT	5.9%	intergenic (+47/‑792)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
	?	NC_002947	15834 =	78 (1.380)					intergenic (+84/‑755)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein

GTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/15834‑15797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcaCCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCG  >  NC_002947/15834‑15978                                                                                                                                                                                         GTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGAT                                    >  3:75876/1‑149  TGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTG                                                                             <  1:226855/107‑1  TGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTG                                                                             >  2:226855/1‑107   GACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTT                                       <  1:70100/144‑1   GACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTT                                       >  2:70100/1‑144                                   GTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCG  >  5:89421/1‑149                                   GTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCG  <  8:126043/149‑1                                   GTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGA                                                  <  7:261690/101‑1                                   GTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGA                                                  >  8:261690/1‑101                                    TCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGTGTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGGTGAGAGGGTCGGCGGGCG  >  5:309410/1‑148                                                                                                                                                                                         GTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/15834‑15797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcaCCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCG  >  NC_002947/15834‑15978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.