New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 27515	59 (1.000)	3 (0.050)	3/240	NT	5.1%	intergenic (‑362/+84)	PP_0022/PP_0023	hypothetical protein/hypothetical protein
	?	NC_002947	= 27539	56 (1.010)					intergenic (‑386/+60)	PP_0022/PP_0023	hypothetical protein/hypothetical protein

CGCCTGCGTCAAATCGCAGAATCACAATTTCGGGCTGTCAGCGAGTATCAGCTCAACGCTCTGGGATATCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/27366‑27515 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcacgacCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGATACTCGCTGACAGCCCGAAA  <  NC_002947/27539‑27393                                                                                                                                                                                                                                                                                                           CGCCTGCGTCAAATCGCAGAATCACAATTTCGGGCTGTCAGCGAGTATCAGCTCAACGCTCTGGGATATCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGA                                                                                                                                                      <  4:307483/149‑1                                 GGCTGGCAGCGAGTATCAGCTCAACGCTCTGGTATATCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACCGTCTCGCTGATCAATCGGACCGCGTCGTGA                                                                                                                      <  8:76063/149‑1                                                                                                            AGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACCGTCTCGCTGATCAATC                                                                                                                                    >  3:34681/1‑60                                                                                                            AGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGACCGTCTCGCTGATCAATC                                                                                                                                    <  4:34681/60‑1                                                                                                                                                TCACGACCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGATACTCGCTGACAGCC       >  4:11825/1‑149                                                                                                                                                TCACGACCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGA                      >  3:155541/1‑134                                                                                                                                                TCACGACCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGA                      <  4:155541/134‑1                                                                                                                                                  ACGACCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGATACTCGCTGACAGCC       <  4:96104/147‑1                                                                                                                                                     ACCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGATACTCGCTGACAGCCCGAAA  <  6:214705/149‑1                                                                                                                                                     ACCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGATACTCGCTGACAGCCCGAAA  >  7:135424/1‑149                                                                                                                                                                                                                                                                                                           CGCCTGCGTCAAATCGCAGAATCACAATTTCGGGCTGTCAGCGAGTATCAGCTCAACGCTCTGGGATATCAGTCTCGTCGTCCGCACTGAAGGGATAACCGATCCGGAGGTAGCTTCAGAATCCATCAAGCCAAGCGGAAGACTCACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/27366‑27515 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcacgacCGTCTCGCTGATCAATCGGACCGCGTCGTGAGTCTTCCGCTTGGCTTGATGGATTCTGAAGCTACCTCCGGATCGGTTATCCCTTCAGTGCGGACGACGAGACTGATATCCCAGAGCGTTGAGCTGATACTCGCTGACAGCCCGAAA  <  NC_002947/27539‑27393

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.