| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 825468 = | 55 (0.930) | 5 (0.090) | 5/240 | NT | 9.3% | coding (649/1500 nt) | PP_0709 | NCS1 family transporter |
| ? | NC_002947 | 825518 = | 46 (0.830) | coding (599/1500 nt) | PP_0709 | NCS1 family transporter | |||||
GGTCAACAAGATTGCCGTTTGGGCCTCGAGCCTGCTGTTCCTGCTGGGCATCGTCGCCTTTGCCGGGCCCTTCGATGCCGGCTACGCAGGCAGCGTCAACCTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/825619‑825468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccaAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTGTTGACCCACAGCATGAAGCGGAAGCCAAAGATGCATACCACCAGGACCAGC > NC_002947/825518‑825664 GGTCAACAAGATTGTCGTTTGGGCCTCGAGCCTGCTGTTCCTGCTGGGCATCGTCGCCTTTGCCGGGCCCTTCGATGCCGGCTACGCAGGCAGCGTCAACCTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGG < 6:178731/149‑1GGTCAACAAGATTGCCGTTTGGGCCTCGAGCCTGCTGTTCCTGCTGGGCATCGTCGCCTTTGCCGGGCCCTTCGATGCCGGCTACGCAGGCAGCGTCAACCTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGG < 6:306007/149‑1 CCTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGGCCAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTG > 4:142409/1‑149 CTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGCGGCGGCGATCCTGGCCAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGG > 1:253805/1‑141 CTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGGCCAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGG < 2:253805/140‑1 TTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGGCCAAGGTTGACGCTGCCTGCGTAGCCG < 1:271723/75‑1 TTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGGCCAAGGTTGACGCTGCCTGCGTAGCCG > 2:271723/1‑75 CCAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTGTTGACCCACAGCATGAAGCGGAAGCCAAAGATGCATACCACCAGGACCAG > 7:126284/1‑149 CAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTGTTGACCCACAGCATGAAGCGGAAGCCAAAGATGCATACCACCAGGACCAGC > 7:174173/1‑149 CAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTGTTGACCCACAGCATGAAGCGGAAGCCAAAGATGCATACCACCAGGAC > 5:315899/1‑145 CAAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTGTTGACCCACAGCATGAAGCGGAAGCCAAAGATGCATACCACCAGGAC < 6:315899/145‑1 GGTCAACAAGATTGCCGTTTGGGCCTCGAGCCTGCTGTTCCTGCTGGGCATCGTCGCCTTTGCCGGGCCCTTCGATGCCGGCTACGCAGGCAGCGTCAACCTTGGCCAGGCAGGCTTCTGGGCTGCGTTCGTCGGC‑GCGGCGATCCTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/825619‑825468‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccaAGGTTGACGCTGCCTGCGTAGCCGGCATCGAAGGGCCCGGCAAAGGCGACGATGCCCAGCAGGAACAGCAGGCTCGAGGCCCAAACGGCAATCTTGTTGACCCACAGCATGAAGCGGAAGCCAAAGATGCATACCACCAGGACCAGC > NC_002947/825518‑825664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |