| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 943231 = | 67 (1.130) | 4 (0.070) | 4/242 | NT | 6.6% | coding (2391/18933 nt) | PP_0806 | surface adhesion protein |
| ? | NC_002947 | 943312 = | 49 (0.880) | coding (2310/18933 nt) | PP_0806 | surface adhesion protein | |||||
ACGTATCCCAACCGGGCTCGGTCACCTCGGCCGACTTGCTGCCGCCCGCACAACCGACTGACCTGGCCCTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/943382‑943231‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcggtCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGGGCCAGGGTGACAGTGAAGGT > NC_002947/943312‑943458 ACGTATCCCAACCGGGCTCGGTCACCTCGGCCGACTTGCTGCCGCCCGCACAACCGACTGACCTGGCCCTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATC > 8:236176/1‑149 CCCTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATCGGTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTC > 1:248580/1‑125 CCCTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATCGGTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTC < 2:248580/125‑1 CTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATCGGTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTG < 1:361508/147‑1 CTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATCGGTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTG > 2:361508/1‑147 ATCGGTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGGGCCAGGGTGACAGTG > 7:307415/1‑148 TCGGTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGGGCCAGGGTGACAGTGAA < 2:179287/149‑1 GTCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGGGCCAGGGTGACAGTGAAGGT > 2:287417/1‑149 ACGTATCCCAACCGGGCTCGGTCACCTCGGCCGACTTGCTGCCGCCCGCACAACCGACTGACCTGGCCCTGACCGATGGCATCACCTTCACCGGTCGCGGCGAACCCGGCGCTACAGTGCAGGTACGCGATGCCGGCGGTGCTGTCATCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/943382‑943231‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcggtCAGGGCCAGGTCAGTCGGTTGTGCGGGCGGCAGCAAGTCGGCCGAGGTGACCGAGCCCGGTTGGGATACGTTGCCGGCGGCATCGGTGAGGGTGACTTGCAAGGTGCTGCCGTCGTTCACGGCAGGGGCCAGGGTGACAGTGAAGGT > NC_002947/943312‑943458 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |