New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1155780 | 51 (0.860) | 3 (0.050) | 3/244 | NT | 5.8% | coding (938/1455 nt) | PP_1013 | sensor histidine kinase |
? | NC_002947 | = 1155828 | 48 (0.850) | coding (986/1455 nt) | PP_1013 | sensor histidine kinase |
TCGAGGTGAGCCGGGCATTCAACAGCATGCGCGAGCGTATCAGCCGTTACCTGACCGAACGCAGCCAGCTGTTCAGCGCCATTTCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1155630‑1155780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctTTGACCAGCAACTCCAGCTCGTCCAGGTCCTGGCTGAACTTGGCCTGCAGGCGCTCGTCCTC < NC_002947/1155828‑1155767 TCGAGGTGAGCCGGGCATTCAACAGCATGCGCGAGCGTATCAGCCGTTACCTGACCGAACGCAGCCAGCTGTTCAGCGCCATTTCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGC < 8:109686/149‑1 CGAGGTGAGCCGGGCATTCAACAGCATGCGCGAGCGTATCAGCCGTTACCTGACCGAACGCAGCCAGCTGTTCAGCGCCATTTCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGCC > 5:326063/1‑149 CCAGCTGTTCAGCGCCATATCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGCCTTTGACCAGCAACTCCAGCTCGTCCAGGTCCTGGCTGAACTTGGCCTGCAGGCGCTCGTCCTC < 1:332210/149‑1 TCAGCGCCATTTCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGCCTTTGACCAGCAACTCCAGCTCGTCCAGGTCCTGGCTGAACTTGGCCTGCAGGCGCTCG > 5:92890/1‑136 TCAGCGCCATTTCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGCCTTTGACCAGCAACTCCAGCTCGTCCAGGTCCTGGCTGAACTTGGCCTGCAGGCGCTCG < 6:92890/136‑1 TCGAGGTGAGCCGGGCATTCAACAGCATGCGCGAGCGTATCAGCCGTTACCTGACCGAACGCAGCCAGCTGTTCAGCGCCATTTCCCACGACCTGCGCACGCCGATCACCCGCCTGCGCCTGCGCGTCGAACTGCTGGAGGACGAGCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1155630‑1155780 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcctTTGACCAGCAACTCCAGCTCGTCCAGGTCCTGGCTGAACTTGGCCTGCAGGCGCTCGTCCTC < NC_002947/1155828‑1155767 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |