New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1400763 =	62 (1.050)	4 (0.070)	4/248	NT	5.5%	coding (733/807 nt)	ybgF	TolQRA transport system periplasmic protein
	?	NC_002947	1400832 =	78 (1.360)					coding (802/807 nt)	ybgF	TolQRA transport system periplasmic protein

AAAAAAGGGCAGTGATTCTAACGAAAAAACCCGCGACTGGCGCGGGTTTCTTTCGAGCGGTACAGCGACAACGCCTAGAGCTTCTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1400911‑1400763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagCTCTAGGCGTTGTCGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGTTTTTTCGTTAGAATCACTGCCCTTTTTTCGTAAACACGCTGCTGCGGATAACGCTATGTCGAGTCCGCGACAGTGCCTGACGGAGGCGGACAGC  >  NC_002947/1400832‑1400977                                                                                                                                                                                                                                                                                                         AAAAAAGTGCAGTGATTCTAACGAAAAAAGTCGCGACTGGCGCGGTTTTCTTTCGCGCGGTACAGCGACACCGCCTAGAGCTTCTGCAGGTCACGCTGGTCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAG                                                                                                                                                    <  6:23859/149‑1  AAAAAGGGCAGTGATTCTAACGAAAAAACCCGCGACTGGCGCGGGTTTCTTTCGAGCGGTACAGCGACAACGCCTAGAGCTTCTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAG                                                                                                                                                    >  2:315133/1‑148                                                                         GCCTAGAGCTTCTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAGCTCTAGGCGTTGTCGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGTTTTTTCGTTAGAATCACTGC                                                                            >  6:312288/1‑149                                                                                 CTTCTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAGCTCTAGGCGTTGTGGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGT                                                                                                >  1:296244/1‑121                                                                                 CTTCTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAGCTCTAGGCGTTGTGGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGT                                                                                                <  2:296244/121‑1                                                                                    CTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAGCTCTAGGCGTTGTCGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGTTTTTTCGTTAGAATCACTGCCCTTTTTTC                                                                   <  5:312288/147‑1                                                                                                                                                   AAGCTCTAGGCGTTGTCGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGTTTTTTCGTTAGAATCACTGCCCTTTTTTCGTAAACACGCTGCTGCGGATAACGCTATGTCGAGTCCGCGACAGTGCCTGACGGAGGCGGACAGC  <  1:360925/149‑1                                                                                                                                                                                                                                                                                                         AAAAAAGGGCAGTGATTCTAACGAAAAAACCCGCGACTGGCGCGGGTTTCTTTCGAGCGGTACAGCGACAACGCCTAGAGCTTCTGCAGGTCACGCTGGGCCAGTTGAGCGGCAGAGGTGCCGGGGTACTGGGTCACGACCTGCTGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1400911‑1400763 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagCTCTAGGCGTTGTCGCTGTACCGCTCGAAAGAAACCCGCGCCAGTCGCGGGTTTTTTCGTTAGAATCACTGCCCTTTTTTCGTAAACACGCTGCTGCGGATAACGCTATGTCGAGTCCGCGACAGTGCCTGACGGAGGCGGACAGC  >  NC_002947/1400832‑1400977

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.