New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1426792	NA (NA)	5 (0.090)	4/248	NT	NA	coding (690/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426869	NA (NA)					coding (767/1422 nt)	PP_1250	group II intron‑encoding maturase

CAGCGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426641‑1426792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGA  <  NC_002947/1426869‑1426722                                                                                                                                                                                                                                                                                                               CAGCGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATG                                                                                                                                                          <  5:143501/149‑1  AGCGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGT                                                                                                                                                         >  2:100152/1‑149   GCGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTC                                                                                                                                                        <  2:263605/149‑1    CGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCG                                                                                                                                                       >  4:104951/1‑149    CGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCG                                                                                                                                                       <  4:245889/149‑1                    CGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTC                                                                                                                                                        >  8:290010/1‑132                    CGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTC                                                                                                                                                        <  7:290010/132‑1                                                           TCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCT                                                                                               >  7:142428/1‑149                                                                        ATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAGCCCACGGCGTGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC                                                                                  <  1:72853/147‑1                                                                          GGCCTGCATCGAACGTCGGATCAGAGACAACTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGC‑GG‑T‑GTCGTCAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACAC                                                                             <  3:208264/149‑1                                                                                  TCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCC                                                                        <  8:142428/149‑1                                                                                           gggTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGAGCAGGATATTCGACAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATC                                                               <  5:74907/146‑1                                                                                                                                                     GTCGAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTT     <  7:314275/149‑1                                                                                                                                                     GTCGAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTT     <  1:170949/149‑1                                                                                                                                                      TCGAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTC    >  7:200625/1‑149                                                                                                                                                        GAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCG   <  8:157703/148‑1                                                                                                                                                        GAGCAGGAAATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGGCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGA  <  8:131282/149‑1                                                                                                                                                                                                                                                                                                               CAGCGGGACACCGCTGGTGCGTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426641‑1426792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgAGCAGGATATTCGACAG‑CAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGA  <  NC_002947/1426869‑1426722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.