New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1574617 =	49 (0.830)	3 (0.050)	3/242	NT	5.7%	coding (398/525 nt)	pcaP	porin
	?	NC_002947	1574656 =	53 (0.950)					coding (359/525 nt)	pcaP	porin

TGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1574764‑1574617 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcctTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGC  >  NC_002947/1574656‑1574796                                                                                                                                                                                                                                                                                                   TGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCT                                                                                                                                               >  5:67871/1‑148                                                                                                           CGAAGGCCGCAAACCGGCATTTGTCGACGATGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCAACCACGAACGCCCCCAGCCCGGCGCCGAGCAATAGCGTTGTCGACTGAACTGCCAGCGACTCACCGACACA                                    >  8:153704/1‑149                                                                                                                 CCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACC                                      >  1:183754/1‑141                                                                                                                 CCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACC                                      <  2:183754/141‑1                                                                                                                                              GCGGCCTTCGTAGTAATGGCCTATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGC  <  4:218862/148‑1                                                                                                                                                                                                                                                                                                   TGTGGGTCGGTGAGGCGCTGGCAGTGCAGTCGACAACGCTATGGCTCGGCGCCGGGCTGGGGGCGTTCGTGGTGGGCTGGATCATCCAGTTCATCGGCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1574764‑1574617 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggcctTCGTAGTAATGGCCGATGAACTGGATGATCCAGCCCACCACGAACGCCCCCAGCCCGGCGCCGAGCCATAGCGTTGTCGACTGCACTGCCAGCGCCTCACCGACCCACAGGCACAGGCCCAGCAACAGCCCCATCACCAGC  >  NC_002947/1574656‑1574796

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.