| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1574654 | 56 (0.950) | 4 (0.070) | 4/246 | NT | 7.0% | coding (361/525 nt) | pcaP | porin |
| ? | NC_002947 | = 1574665 | 52 (0.920) | coding (350/525 nt) | pcaP | porin | |||||
CTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1574502‑1574654‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTGATCATCGGGCCACTGTTCGTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATT < NC_002947/1574665‑1574520 CTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGC > 4:158222/1‑149 TTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCG > 1:304695/1‑149 TTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGG < 3:158222/148‑1 TTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCG < 4:288348/147‑1 CGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGGCCATTACTACGAAGGCCGCAAA > 3:101774/1‑86 CGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGGCCATTACTACGAAGGCCGCAAA < 4:101774/86‑1 GCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGGCCATTACTACGAAGGCCGCAAAC < 7:262487/86‑1 GCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGGCCATTACTACGAAGGCCGCAAAC > 8:262487/1‑86 GCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTGATCATCGGGCCACTGTTCGTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATT > 7:104150/1‑149 GCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTGATCATCGGGCCACTGTTCGTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTG < 3:72453/128‑1 GCCATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTGATCATCGGGCCACTGTTCGTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTG > 4:72453/1‑128 CTTTTTTTGCCGCATGGCAATCGGGCCGGCGTTGGCTTCCACGGCGCGCTTCAGGGTCGGGCACAGGCCCAGCATGAACGCAGCTTCCGCCACCACGAACAGTGGCCCGATGATCAGGCCGCTCACGTCGTCGACAAATGCCGGTTTGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1574502‑1574654‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccATTACTACGAAGGCCGCAAACCGGCATTTGTCGACGACGTGAGCGGCCTGATCATCGGGCCACTGTTCGTGGTGGCGGAAGCTGCGTTCATGCTGGGCCTGTGCCCGACCCTGAAGCGCGCCGTGGAAGCCAACGCCGGCCCGATT < NC_002947/1574665‑1574520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |