| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2127698 = | 66 (1.120) | 5 (0.090) | 4/238 | NT | 6.9% | coding (3069/3873 nt) | PP_1887 | hypothetical protein |
| ? | NC_002947 | 2127748 = | 74 (1.350) | coding (3119/3873 nt) | PP_1887 | hypothetical protein | |||||
CCAAAGCATGCCCGGTGCTGGCATCGGTGGTGGTAATGGACGCCATGCGTCCTTGGCGGTCATACCCGAACGTCGACTCCAGCAGCAGCAGTTGCCTGGCAGGCGCACGCTGCAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGT‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2127852‑2127698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagcgt‑gCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGCTTTGGCAACTCTGCTCGAGTACGAT > NC_002947/2127748‑2127872 CCAAAGCATGCCCGGTGCTGGCATCGGTGGTGGTTATGGACGCCATGCGTCCTTGGCGGTCATACCCGAACGTCGACTCCAGCAGCAGCAGTTGCCTGGCAGGCGCACGCTGCAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGC < 2:41307/149‑1CCAAAGCATGCCCGGTGCTGGCATCGGTGGTGGTAATGGACGCCATGCGTCCTTGGCGGTCATACCCGAACGTCGACTCCAGCAGCAGCAGTTGCCTGGCAGGCGCACGCTGCAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTG > 4:89956/1‑148 CAGTTGCCTGGCAGGCGCACGCTGCAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGTGGTTTTTTCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACC > 5:155593/1‑148 CACGCTGCAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGT‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATG > 5:244259/1‑149 ACGCTGCAGCTGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGT‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGC > 8:130468/1‑149 CAGCTGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGT‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGCTTTG < 7:130468/147‑1 CAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGT‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGCTTTG < 6:244259/147‑1 GT‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCC > 5:189663/1‑54 GT‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCC < 6:189663/54‑1 T‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGCTTTGGCAACTCTGCTCGAGTACGAT < 1:271876/127‑1 T‑GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGCTTTGGCAACTCTGCTCGAGTACGAT > 2:271876/1‑127 GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACTGATGCCAGCACCGGGCATGCTTT > 1:326848/1‑104 GCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACTGATGCCAGCACCGGGCATGCTTT < 2:326848/104‑1 CCAAAGCATGCCCGGTGCTGGCATCGGTGGTGGTAATGGACGCCATGCGTCCTTGGCGGTCATACCCGAACGTCGACTCCAGCAGCAGCAGTTGCCTGGCAGGCGCACGCTGCAGCCGGTAGCGAGTCCTTTTGGGCTCAGGCGCGTGCAGCGT‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2127852‑2127698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcagcgt‑gCGCCTGCCAGGCAACTGCTGCTGCTGGAGTCGACGTTCGGGTATGACCGCCAAGGACGCATGGCGTCCATTACCACCACCGATGCCAGCACCGGGCATGCTTTGGCAACTCTGCTCGAGTACGAT > NC_002947/2127748‑2127872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |