New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 223669278 (1.320)6 (0.110) 6/246 NT 7.3% coding (1803/2016 nt) uvrB uvrABC excinuclease protein B
?NC_002947 = 2236715 78 (1.370)coding (1826/2016 nt) uvrB uvrABC excinuclease protein B

TACGCCGATAACGTAACAGGCTCCATGCAGCGAGCCATCGACGAAACCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2236540‑2236692
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccTTGCGCTTCTTGCTGCGCGCACCGGGCACGGTGGCACCTTCCATGATGTCGGTGATGTCCTTGACCACGCCCTTGGGCACGATGCCGTTGGCTTCGTTGAAGGCGATCTGCTTCTCGCGGCGGCGCTCGGTTTCGTCG  <  NC_002947/2236715‑2236578
                                                                                                                                                                                                                                                                                                   
TACGCCGATAACGTAACAGGCTCCATGCAGCGAGCCATCGACGAAACCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGT                                                                                                                                                >  8:135108/1‑149
   GCCGATAACGTAACAGGCTCCATGCAGCGAGCCATCGACGAAACCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCTACATCATGGAAGGTGCCACCGTGCC                                                                                                                                             >  5:312151/1‑149
                                        ACGAAACCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCATGCCCTTGCGCTTCTTGCTGCGCGCACCGGGCA                                                                                                                <  3:211668/141‑1
                                        ACGAAACCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCATGCCCTTGCGCTTCTTGCTGCGCGCACCGGGCA                                                                                                                >  4:211668/1‑141
                                              CCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGTGCCCTTGCGCTTCTTGCTGCGCGCACCGGGCACG                                                                                                              >  5:311448/1‑137
                                              CCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGTGCCCTTGCGCTTCTTGCTGCGCGCACCGGGCACG                                                                                                              <  6:311448/137‑1
                                                                                                    CCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGTGCCCTTGCGCTTCTTGCTGCGCGCACCGGGCAC                                                                                                               >  3:39397/1‑82
                                                                                                    CCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGTGCCCTTGCGCTTCTTGCTGCGCGCACCGGGCAC                                                                                                               <  4:39397/82‑1
                                                                                                                                                        CTTGCGCTTCTTGCTGCGCGCACCGGGCACGGTGGCACCTTCCATGATGTCGGTGATGTCCTTGACCACGCCCTTGGGCACGATGCCGTTGGCTTCGTTGAAGGCGATCTGCTTCTCGCGGCGGCGCTCGGTTTCGTCG  <  1:85072/139‑1
                                                                                                                                                        CTTGCGCTTCTTGCTGCGCGCACCGGGCACGGTGGCACCTTCCATGATGTCGGTGATGTCCTTGACCACGCCCTTGGGCACGATGCCGTTGGCTTCGTTGAAGGCGATCTGCTTCTCGCGGCGGCGCTCGGTTTCGTCG  >  2:85072/1‑139
                                                                                                                                                                                                                                                                                                   
TACGCCGATAACGTAACAGGCTCCATGCAGCGAGCCATCGACGAAACCGAGCGCCGCCGCGAGAAGCAGATCGCCTTCAACGAAGCCAACGGCATCGTGCCCAAGGGCGTGGTCAAGGACATCACCGACATCATGGAAGGTGCCACCGTGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2236540‑2236692
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccTTGCGCTTCTTGCTGCGCGCACCGGGCACGGTGGCACCTTCCATGATGTCGGTGATGTCCTTGACCACGCCCTTGGGCACGATGCCGTTGGCTTCGTTGAAGGCGATCTGCTTCTCGCGGCGGCGCTCGGTTTCGTCG  <  NC_002947/2236715‑2236578

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.