New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2245538	65 (1.100)	4 (0.070)	4/238	NT	6.3%	intergenic (+112/‑224)	dusC/ibpA	tRNA‑dihydrouridine synthase DusC/small heat shock protein IbpA
	?	NC_002947	= 2245614	58 (1.060)					intergenic (+188/‑148)	dusC/ibpA	tRNA‑dihydrouridine synthase DusC/small heat shock protein IbpA

GCTGGGGGTAGAGGCGCAAGTCTTGGAGGCTTGCGTCGCCTGAGCAGGCCGCTGGTACTGCACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2245384‑2245538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGC  <  NC_002947/2245614‑2245467                                                                                                                                                                                                                                                                                                                 GCTGGGGGTAGAGGCGCAAGTCTTGGAGGCTTGCGTCGCCTGAGCAGGCCGCTGGTACTGCACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTC                                                                                                                                                            >  5:38188/1‑149     GGGGTAGAGGCGCAAGTCTTGGAGGCTTGCGTCGCCTGAGCAGGCCGCTGGTACTGCACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGG                                                                                                                                                        >  6:188862/1‑149     GGGGTAGAGGCGCAAGTCTTGGAGGCTTGCGTCGCCTGAGCAGGCCGCTGGTACTGCACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGG                                                                                                                                                        <  6:249731/149‑1                                   GTCGCCTGAGCAGGCCGCTGGTACTGCACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGGGTGAACCCGTTCCTACACGGCGGCCTGTGC                                                                                                                          >  3:356735/1‑149                                                                                          GGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGGGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCG                                                                   <  4:356735/149‑1                                                                                                  CCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGGGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGT                                                                            <  1:262558/132‑1                                                                                                  CCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGGGTGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGT                                                                            >  2:262558/1‑132                                                                                                                                                         GGTGAACCCGTTCCTACACGGCGGCCTGAGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTC    >  1:216579/1‑149                                                                                                                                                           TGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGCTCAGGCGTCGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATGGGCCAGCAGGGCCGGCCCTTTCGC  <  5:282998/149‑1                                                                                                                                                                                                                                                                                                                 GCTGGGGGTAGAGGCGCAAGTCTTGGAGGCTTGCGTCGCCTGAGCAGGCCGCTGGTACTGCACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCCCTGCTGGCCAATCCCCACCCGCCGTTCACTGTTGCCGCCGCTACCCTATTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2245384‑2245538 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGTTCCTACACGGCGGCCTGTGCCCAACCACCGACCTGTGTCCATCCTCGATCAGGCGTAGGAGCGGGTTTACCCGCGAATAGGGTAGCGGCGGCAACAGTGAACGGCGGGTGGGGATTGGCCAGCAGGGCCGGCCCTTTCGC  <  NC_002947/2245614‑2245467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.