New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2256677	0 (0.000)	7 (0.120)	5/250	NT	100%	coding (34/1302 nt)	PP_1990	transposase
	?	NC_002947	= 2413151	NA (NA)					intergenic (+415/‑6)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase

GAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2256620‑2256677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGT  <  NC_002947/2413151‑2413006                                                                                                                                                                                                                GAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGAGTGGATTTCAGCGAATTCTACCG                                                              >  5:153829/1‑146              CCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATG                                            >  6:280026/1‑149              CCGCCAGCGTAATGGCCAAACTTGCCTTGAAGCAGGCCATTACGCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATG                                            >  1:220288/1‑149                GCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGC                                          >  5:359111/1‑149                  CAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCC                                        >  2:293145/1‑149                            GCCAAACTTGCCTTGGAGCAGGCCATTGCGCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCGTAAGGGCGa                               >  1:91631/1‑147                                      CCTTGGAGCAGGCCATTGCGCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTT                     <  6:359111/148‑1                                                         GCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGT  >  2:125590/1‑148                                                         GCTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGAACTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAtt  >  8:128607/1‑146                                                                                                                                                                                                                GAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2256620‑2256677 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcTG‑‑GCGGGTGCTTTTTTCTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGTCACTTTTTGTCAAACGCGACAAAAAGT  <  NC_002947/2413151‑2413006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.