New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 322912354 (0.910)3 (0.050) 3/242 NT 5.3% coding (580/1359 nt) PP_2829 GntR family transcriptional regulator
?NC_002947 = 3229160 57 (1.020)coding (617/1359 nt) PP_2829 GntR family transcriptional regulator

CATGCCGATGACGTCCATCTGGCCCCCGATGTGCTCGCGTTGCTGGAGACGCTGCTAGCGGCGCTGGCCCTTCAAGGTGGTACCGCATTGGTGCATTCGCCCTGTTGCTGGCAAGTGTTGCGCGCCCTGGCGCGTGCCGGCATGCGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3228973‑3229123
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtgcAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGCGTCTCCAGC  <  NC_002947/3229160‑3229014
                                                                                                                                                                                                                                                                                                          
CATGCCGATGACGTCCATCTGGCCCCCGATGTGCTCGCGTTGCTGGAGACGCTGCTAGCGGCGCTGGCCCTTCAAGGTGGTACCGCATTGGTGCATTCGCCCTGTTGCTGGCAAGTGTTGCGCGCCCTGGCGCGTGCCGGCATGCGCGT                                                                                                                                                       <  8:231018/149‑1
                                    GCGTTGCTGGAGACGCTGCTAGCGGCGCTGGCCCTTCAAGGTGGTACCGCATTGGTGCATTCGCCCTGTTGCTGGCAAGTGTTGCGCGCCCTGGCGCGTGCCGGCATGCGCGTGCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCT                                                                                                                   >  7:23599/1‑149
                                             GAGACGCTGCTAGCGGCGCTGGCCCTTCAAGGTGGTACCGCATTGGTGCATTCGCCCTGTTGCTGGCAAGTGTTGCGCGCCCTGGCGCGTGCCGGCATGCGCGTGCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGC                                                                                                          <  4:310536/149‑1
                                              AGACGCTGCTAGCGGCGCTGGCCCTTCAAGGTGGTACCGCATTGGTGCATTCGCCCTGTTGCTGGCAAGTGTTGCGCGCCCTGGCGCGTGCCGGCATGCGCGTGCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCG                                                                                                         <  8:23599/149‑1
                                                                                                                                                 GCGTGCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGCGTCTC      <  2:17602/149‑1
                                                                                                                                                   GTGCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGCGTCTCCA    <  6:180927/149‑1
                                                                                                                                                     GCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCAC                                                   >  3:63616/1‑100
                                                                                                                                                     GCAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCAC                                                   <  4:63616/100‑1
                                                                                                                                                      CAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGCGTCTCCAGC  >  3:78719/1‑148
                                                                                                                                                      CAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGC           <  1:152485/139‑1
                                                                                                                                                      CAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGC           >  2:152485/1‑139
                                                                                                                                                                                                                                                                                                          
CATGCCGATGACGTCCATCTGGCCCCCGATGTGCTCGCGTTGCTGGAGACGCTGCTAGCGGCGCTGGCCCTTCAAGGTGGTACCGCATTGGTGCATTCGCCCTGTTGCTGGCAAGTGTTGCGCGCCCTGGCGCGTGCCGGCATGCGCGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3228973‑3229123
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtgcAGCTCGGGGTTGCCACGGGCATCCAGTGGTGCCTCCAGCACGCGCATGCCGGCACGCGCCAGGGCGCGCAACACTTGCCAGCAACAGGGCGAATGCACCAATGCGGTACCACCTTGAAGGGCCAGCGCCGCTAGCAGCGTCTCCAGC  <  NC_002947/3229160‑3229014

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.