New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3299640	76 (1.290)	5 (0.090)	5/250	NT	6.5%	coding (1857/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ
	?	NC_002947	= 3299661	70 (1.210)					coding (1878/2319 nt)	pvdQ	acyl‑homoserine lactone acylase PvdQ

GTGCAGCAGCCTGGCCGCCTGGAACGGCAAGGCCGACCTCGACAGTGGTATGGGCCTGGTGCACTTCCAGAACCTGTTCAATGCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3299490‑3299640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGCCTGCTCGACAGCCAGGCCGCGCGGGGTGTGCTGCGGATCGGCCGGGTTGAATGCCACTCGCCAGCTTTCAGGGTGCTCGGCCAGCGCATTGAACAGGTTCTGGAAGTGCACCAGGCCCATACCACTGTCGAGGTCGGCCTTGCCG  <  NC_002947/3299661‑3299514                                                                                                                                                                                                                                                                                                             GTGCAGCAGCCTGGCCGCCTGGAACGGCAAGGCCGACCTCGACAGTGGTATGGGCCTGGTGCACTTCCAGAACCTGTTCAATGCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGC                                                                                                                                                        >  7:154904/1‑149                               GGCCGACCTCGACAGTGGTATGGGTCTGGTGCACTTCCAGAACCTGTTCAATGCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGCCGCCTGCTCGACAGCCAGGCCGCGCGGG                                                                                                                          <  2:235413/149‑1                                         GACAGTGGTATGGGCCTGGTGCACTTCCAGAACCTGTTCAATGCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGCCGCCTGCTCGACAGCCAGGCCGCGCGGGGTGTGCTGC                                                                                                                 <  5:357781/148‑1                                         GACAGTGGTATGGGCCTGGTGCACTTCCAGAACCTGTTCAATGCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGCCGCCTGCTCGACAGCCAGGCCGCGCGGGGTGTGCTGC                                                                                                                 >  6:357781/1‑148                                                                                   GCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGCCGCCTGCTCGACAGCCAGGCCGCGCGGGGTG                                                                                                                       >  7:102089/1‑100                                                                                   GCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGCCGCCTGCTCGACAGCCAGGCCGCGCGGGGTG                                                                                                                       <  8:102089/100‑1                                                                                                                                                       CCGCCTGCTCGACAGCCAGGCCGCGCGGGGTGTGCTGCGGATCGGCCGGGTTGAATGCCACTCGCCAGCTTTCAGGGTGCTCGGCCAGCGCATTGAACAGGTTCTGGAAGTGCACCAGGCCCATACCACTGTCGAGGTCGGCCTTGCCG  >  5:279518/1‑149                                                                                                                                                                                                                                                                                                             GTGCAGCAGCCTGGCCGCCTGGAACGGCAAGGCCGACCTCGACAGTGGTATGGGCCTGGTGCACTTCCAGAACCTGTTCAATGCGCTGGCCGAGCACCCTGAAAGCTGGCGAGTGGCATTCAACCCGGCCGATCCGCAGCACACCCCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3299490‑3299640 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcCGCCTGCTCGACAGCCAGGCCGCGCGGGGTGTGCTGCGGATCGGCCGGGTTGAATGCCACTCGCCAGCTTTCAGGGTGCTCGGCCAGCGCATTGAACAGGTTCTGGAAGTGCACCAGGCCCATACCACTGTCGAGGTCGGCCTTGCCG  <  NC_002947/3299661‑3299514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.