New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3343823	69 (1.170)	4 (0.070)	4/248	NT	5.7%	coding (226/330 nt)	PP_5541	hypothetical protein
	?	NC_002947	= 3343856	65 (1.140)					coding (259/330 nt)	PP_5541	hypothetical protein

CCTGCGGCACTTTAATCAACATCCAAGCCCGACTCTCACTTGAAAACGTCACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3343674‑3343823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGCCATCGCCGCGGACAGTTTCTGTCCACGGCAGTCAGGGTGTACCTCTTCGAGCAAGAGCACGCCTTTTTTCCCGTAGATACCCAGGAAAAGTTGAGTGACGTTTTCAAG  <  NC_002947/3343856‑3343712                                                                                                                                                                                                                                                                                                         CCTGCGGCACTTTAATCAACATCCAAGCCCGACTCTCACTTGAAAACGTCACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGC                                                                                                                                                     <  5:194086/148‑1                                        TTGAAAACGTCACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCTTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGC                                                                                                              >  1:36283/1‑148                                            AAACGTCACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCTTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGCCATCG                                                                                                         <  2:36283/149‑1                                                   ACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCT                                                                                                                                                   >  3:180108/1‑100                                                   ACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCT                                                                                                                                                   <  4:180108/100‑1                                                                          CGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCTTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGCCATC                                                                                                          <  7:223651/118‑1                                                                          CGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCTTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGCCATC                                                                                                          >  8:223651/1‑118                                                                                                                                                   GCCTTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGCCATCGCCGCGGACAGTTTCTGTCCACGGCAGTCAGGGTGTACCTCTTCGAGCAAGAGCACGCCTTTTTTCCCGTAGATACCCAGGAAAAGTTGAGTGACGTTTTCAAG  <  7:30037/149‑1                                                                                                                                                                                                                                                                                                         CCTGCGGCACTTTAATCAACATCCAAGCCCGACTCTCACTTGAAAACGTCACTCAACTTTTCCTGGGTATCTACGGGAAAAAAGGCGTGCTCTTGCTCGAAGAGGTACACCCTGACTGCCGTGGACAGAAACTGTCCGCGGCGATGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3343674‑3343823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctTGGCGACCCAGTCGTGAGCACGCTCGAGCGCCCAGGCCATCGCCGCGGACAGTTTCTGTCCACGGCAGTCAGGGTGTACCTCTTCGAGCAAGAGCACGCCTTTTTTCCCGTAGATACCCAGGAAAAGTTGAGTGACGTTTTCAAG  <  NC_002947/3343856‑3343712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.