New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3685928	61 (1.030)	4 (0.070)	4/248	NT	6.3%	coding (336/1332 nt)	PP_3251	hypothetical protein
	?	NC_002947	= 3685965	60 (1.050)					coding (373/1332 nt)	PP_3251	hypothetical protein

CGGCCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3685777‑3685928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGT  <  NC_002947/3685965‑3685821                                                                                                                                                                                                                                                                                                           CGGCCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTG                                                                                                                                                      >  7:178557/1‑149    CCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGAT                                                                                                                                                   >  6:116807/1‑149                                               CGTTGACCGGGCACAACGCCGTCCAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGAGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCAC                                                                                                        <  4:219690/149‑1                                                GTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCTTTGTTGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACG                                                                                                       <  8:296494/149‑1                                                      CGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATC                                                                                                           >  5:25350/1‑139                                                      CGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATC                                                                                                           <  6:25350/139‑1                                                                                                                                                     GGATCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGT  >  5:80565/1‑149                                                                                                                                                                                                                                                                                                           CGGCCTGGAGCAAGAAGCATACCGCCGAGGTCGCCAAGGCCTACACCGTTTACCGGGCACAACGCCGTCAAGGTATGCCCCGGCGTTACTTTTCCAACCGCGCCCACGCATTGTGGTTCCTGCAACAGGTTGCGCCTACCAAGGCCGTGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3685777‑3685928 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggatCGCGCCAGTGATGCAGGGTGCCCTGTAGCCAGGCGCCATCCACGGCCTTGGTAGGCGCAACCTGTTGCAGGAACCACAATGCGTGGGCGCGGTTGGAAAAGTAACGCCGGGGCATACCTTGACGGCGTTGTGCCCGGTAAACGGT  <  NC_002947/3685965‑3685821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.