| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4026506 = | 58 (0.980) | 3 (0.050) | 3/246 | NT | 5.4% | coding (508/633 nt) | PP_3551 | LuxR family transcriptional regulator |
| ? | NC_002947 | 4026560 = | 49 (0.860) | coding (454/633 nt) | PP_3551 | LuxR family transcriptional regulator | |||||
AGCACGCCGGGCTGGCGCGACAGGGCGATCAGGCGCTGGCCTTGGTGCAGGCGCGCATCGACGGCCTGACGCCGCGTGAGCGAGACGTCTTCGTACCGCTGGCCCAAGGGTTGAACAACCGCGAGATTGCCGAGCAGTTGGGCATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4026655‑4026506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgGTACGAAGACGTCTCGCTCACGCGGCGTCAGGCCGTCGATGCGCGCCTGCACCAAGGCCAGCGCCTGATCGCCCTGTCGCGCCAGCCCGGCGTGCTCCAGCGCAGCCTGAACGCTGTCGAGCAGCAACTGGTCGTTGTAGG > NC_002947/4026560‑4026700 AGCACGCCGGGCTGGCGCGACAGGGCGATCAGGCGCTGGCCTTGGTGCAGGCGCGCATCGACGGCCTGACGCCGCGTGAGCGAGACGTCTTCGTACCGCTGGCCCAAGGGTTGAACAACCGCGAGATTGCCGAGCAGTTGGGCATCAGC < 4:70932/149‑1 TCTTCGTACCGCTGGCCCAAGGGTTGAACAACCGCGAGATTGCCGAGCAGTTGGGCATCAGCGGTACGAAGACGTCTCGCTCACGCGGCGTCAGGCCGTCGATGCGCGCCTGCACCAAGGCCAGCGCCTGATCGCCCTGTCGCGCCAGC > 3:76309/1‑149 GTACCGCTGGCCCAAGGGTTGAACAACCGCGAGATTGCCGAGCAGTTGGGCATCAGCGGTACGAAGACGTCTCGCTCACGCGGCGTCAGGCCGTCGATGCGCGCCTGCACCAAGGCCAGCGCCTGATCGCCCTGTCGCGCCAGCCCGGC > 4:42570/1‑149 CCGCTGGCCCAAGGGTTGAACAACCGCGAGATTGCCGAGCAGTTGGGCATCAGCGGTACGAAGACGTCTCGCTCACGCGGCGTCAGGCCGTCGATGCGCGCCTGCACCAAGGCCAGCGCCTGATCGCCCTGTCGCGCCAGCCCGGCGTG < 3:42570/149‑1 CATCAGCGGTACGAAGACGTCTCGCTCACGCGGCGTCAGGCCGTCGATGCGCGCCTGCACCAAGGCCAGCGCCTGATCGCCCTGTCGCGCCAGCCCGGCGTGCTCCAGCGCAGCCTGAACGCTGTCGAGCAGCAACTGGTCGTTGTAGG < 4:76309/149‑1 AGCACGCCGGGCTGGCGCGACAGGGCGATCAGGCGCTGGCCTTGGTGCAGGCGCGCATCGACGGCCTGACGCCGCGTGAGCGAGACGTCTTCGTACCGCTGGCCCAAGGGTTGAACAACCGCGAGATTGCCGAGCAGTTGGGCATCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4026655‑4026506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgGTACGAAGACGTCTCGCTCACGCGGCGTCAGGCCGTCGATGCGCGCCTGCACCAAGGCCAGCGCCTGATCGCCCTGTCGCGCCAGCCCGGCGTGCTCCAGCGCAGCCTGAACGCTGTCGAGCAGCAACTGGTCGTTGTAGG > NC_002947/4026560‑4026700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |