| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4115949 = | 62 (1.050) | 6 (0.110) | 5/244 | NT | 8.7% | coding (637/2187 nt) | ycaO | ribosomal protein S12 methylthiotransferase accessory factor |
| ? | NC_002947 | 4116004 = | 67 (1.190) | coding (582/2187 nt) | ycaO | ribosomal protein S12 methylthiotransferase accessory factor | |||||
CCAACATGTCGGGCATCCTCGCCGGGTTGGGGATGAAGATCGAGATCGCCTCGTGGCGCAACATTGTCCCTAACGTCTGGTCGCTGCACGTACGCGATGCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4116101‑4115949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgcATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGG > NC_002947/4116004‑4116149 CCAACATGTCGGGCATCCTCGCCGGGTTGGGGATGAAGATCGAGATTGCCTCGTGGCGCAACATTGTCCCTAACGTCTGGTCGCTGCACGTACGCGATGCGCAGTCGCCGATGTGCTTTACAAACGGTAAAGGCGCCACCAAGGAGGCT > 7:70535/1‑149CCAACATGTCGGGCATCCTCGCCGGGTTGGGGATGAAGATCGAGATCGCCTCGTGGCGCAACATTGTCCCTAACGTCTGGTCGCTGCACGTACGCGATGCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCT > 3:192667/1‑149 GATGCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGA > 1:178071/1‑148 GATGCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGA > 7:337923/1‑148 TGCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACAT > 6:154164/1‑149 GCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGA < 1:342079/135‑1 GCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGA > 2:342079/1‑135 CAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTG < 2:178071/149‑1 CGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGG < 4:312873/149‑1 CGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGG > 6:227468/1‑149 CGCATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTG < 3:323753/148‑1 CCAACATGTCGGGCATCCTCGCCGGGTTGGGGATGAAGATCGAGATCGCCTCGTGGCGCAACATTGTCCCTAACGTCTGGTCGCTGCACGTACGCGATGCGCAGTCGCCGATGTGCTTTACCAACGGTAAAGGCGCCACCAAGGAGGCTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4116101‑4115949‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcgcATCGCGTACGTGCAGCGACCAGACGTTAGGGACAATGTTGCGCCACGAGGCGATCTCGATCTTCATCCCCAACCCGGCGAGGATGCCCGACATGTTGGCAATGGTCTGCTCCAGCGGCAGGTCCTTGCCGGGGATATAGGTGCTGG > NC_002947/4116004‑4116149 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |