New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4127298 =	67 (1.130)	7 (0.130)	6/240	NT	10.1%	coding (63/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D
	?	NC_002947	4127337 =	62 (1.120)					coding (24/1344 nt)	opdT‑II	tyrosine‑specific outer membrane porin D

ATTGTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4127452‑4127298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG  >  NC_002947/4127337‑4127484                                                                                                                                                                                                                                                                                                                 ATTGTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTAGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGG                                                                                                                                                             >  6:209003/1‑148    GTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGC                                                                                                                                                         >  3:70197/1‑149     TAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCC                                                                                                                                                        <  7:225787/149‑1       ATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATTACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG                                                                                                                                                      <  5:47084/149‑1                                                                                                                   CACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAAC                                                           >  1:41043/1‑132                                                                                                                   CACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAAC                                                           <  2:41043/132‑1                                                                                                                      TGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCAT                                        >  1:116306/1‑148                                                                                                                        GCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTA                                      >  1:37108/1‑148                                                                                                                        GCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCA                                         <  5:322965/145‑1                                                                                                                        GCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCA                                         >  6:322965/1‑145                                                                                                                                     CGCTGGCCGGCGTTGGCAGCCAGTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCG                        <  2:37108/149‑1                                                                                                                                                           GTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG  <  2:116306/149‑1                                                                                                                                                           GTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG  <  5:151828/149‑1                                                                                                                                                                                                                                                                                                                 ATTGTAATGCGCCGATCACCTTGGCGTTATCTGCCGGCCGTCAATCTTGGCCCGCCGACATAACAACAAATGCGACGTTCAAGGAGCATCGGATGACGTGCAGATCACCCCTGACACTGGCTGCTTGCCTGGCGCTGGCCGGCGTTGGCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4127452‑4127298 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagccagTGTCAGGGGTGATCTGCACGTCATCCGATGCTCCTTGAACGTCGCATTTGTTGTTATGTCGGCGGGCCAAGATTGACGGCCGGCAGATAACGCCAAGGTGATCGGCGCATTACAATTGCGTCATCGGCAACGCAGCGCTCTGGGGCGG  >  NC_002947/4127337‑4127484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.