New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4135844 =	66 (1.120)	7 (0.130)	4/238	NT	11.5%	coding (53/921 nt)	PP_3640	AraC family transcriptional regulator
	?	NC_002947	4135888 =	46 (0.840)					coding (97/921 nt)	PP_3640	AraC family transcriptional regulator

CGGCATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4135999‑4135844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcatGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTTGTC  >  NC_002947/4135888‑4136033                                                                                                                                                                                                                                                                                                                CGGCATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGG                                                                                                                                                           >  7:236320/1‑149   GCATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCT                                                                                                                                                         >  1:118940/1‑149     ATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGG                                                                                                                                                       >  8:5537/1‑149      TCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGC                                                                                                                                                      <  8:236320/149‑1                                                                                                                 ATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCTTCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGT                                           >  3:25448/1‑149                                                                                                                 ATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGT                                           >  5:141773/1‑149                                                                                                                 ATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGT                                           >  3:18831/1‑149                                                                                                                  TGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGT                                           >  3:312773/1‑148                                                                                                                   GCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGA                                         >  8:164594/1‑149                                                                                                                           CCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGT                                 <  4:18831/149‑1                                                                                                                           CCGCAATAGCGGCCTACATGAAACAGGCTGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGT                                 <  6:141773/149‑1                                                                                                                                                       TGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTT     >  2:66299/1‑149                                                                                                                                                       TGGCATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGG                                                                                                         >  4:369706/1‑49                                                                                                                                                          CATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTTGTC  <  3:243853/149‑1                                                                                                                                                          CATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGC       >  2:38279/1‑144                                                                                                                                                          CATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGC       <  1:38279/144‑1                                                                                                                                                           ATGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCT                             >  2:36873/1‑121                                                                                                                                                                                                                                                                                                                CGGCATCACCTTTCTCCAGGCAAATGGCCTGCGGCTGGCCGTCAATGTGCAGCCAGCAATGGCCTTGCACCACCAGATGAAAGCTGGCCCGGCCCATGCCTTGGGTACTGGCATGCCAGCCGCCGCAATAGCGGCCTACATGAAACAGGCTGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4135999‑4135844 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggcatGCCAGTACCCAAGGCATGGGCCGGGCCAGCTTTCATCTGGTGGTGCAAGGCCATTGCTGGCTGCACATTGACGGCCAGCCGCAGGCCATTTGCCTGGAGAAAGGTGATGCCGTGTTCCTGCTGCGTGACCTGGCCTATCGCTTGTC  >  NC_002947/4135888‑4136033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.