New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4140889	54 (0.910)	3 (0.050)	3/242	NT	5.1%	coding (517/597 nt)	PP_5609	hypothetical protein
	?	NC_002947	= 4140908	60 (1.070)					coding (536/597 nt)	PP_5609	hypothetical protein

CAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGATGATGCAGAAGGACGACGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4140738‑4140889 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgatgCGCGGGTGCAGGCGGCCGCCATCGGCTGCGCCCAGGACCACGACGATTTCATCGGCACGCGGGGCGTCTTCGATCTGCATTTCCAGGGTGATGTAGTGCGAACGCAGGCCTTCGTCGTCCTTCTGCATCATCGGGATCTGGATCGAA  <  NC_002947/4140908‑4140762                                                                                                                                                                                                                                                                                                             CAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGATGATGCAGAAGGACGACGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCC                                                                                                                                                         >  1:43351/1‑148  AACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGATGATGCAGAAGGACGACGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGA                                                                                                                                                       <  6:228495/149‑1    ccAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGATGATGCAGAAGGACGACGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATG                                                                                                                                                     <  4:220007/147‑1                                  GATCCCGATGATGCAGAAGGACGACGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGCGCGGGTGCAGGCGGCCGCCATCGGCTGCG                                                                                                                       <  2:82272/149‑1                                                          CGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGCGCGGGTGCAGGCGGCCGCCATCGGCT                                                                                                                          >  3:129037/1‑122                                                          CGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATGCGCGGGTGCAGGCGGCCGCCATCGGCT                                                                                                                          <  4:129037/122‑1                                                                                                                                                     GATGCGCGGGTGCAGGCGGCCGCCATCGGCTGCGCCCAGGACCACGACGATTTCATCGGCACGCGGGGCGTCTTCGATCTGCATTTCCAGGGTGATGTAGTGCGAACGCAGGCCTTCGTCGTCCTTCTGCATCATCGGGATCTGGATC     >  3:291505/1‑148                                                                                                                                                       TGCGCGGGTGCAGGCGGCCGCCATCGGCTGCGCCCAGGACCACGACGATTTCATCGGCACGCGGGGCGTCTTCGATCTGCATTTCCAGGGTGATGTAGTGCGAACGCAGGCCTTCGTCGTCCTTCTGCATCATCGGGATCTGGATCGAA  <  1:67413/149‑1                                                                                                                                                                                                                                                                                                             CAACAAGCGCGGCGGCCCAGGCACTTCGATCCAGATCCCGATGATGCAGAAGGACGACGAAGGCCTGCGTTCGCACTACATCACCCTGGAAATGCAGATCGAAGACGCCCCGCGTGCCGATGAAATCGTCGTGGTCCTGGGCGCAGCCGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4140738‑4140889 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgatgCGCGGGTGCAGGCGGCCGCCATCGGCTGCGCCCAGGACCACGACGATTTCATCGGCACGCGGGGCGTCTTCGATCTGCATTTCCAGGGTGATGTAGTGCGAACGCAGGCCTTCGTCGTCCTTCTGCATCATCGGGATCTGGATCGAA  <  NC_002947/4140908‑4140762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.