New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4254375	58 (0.980)	4 (0.070)	4/244	NT	6.4%	coding (1753/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4254411	61 (1.080)					coding (1717/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator

TGGCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4254222‑4254375 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgTTGTGCCGACAGCTGCGTAGCTCGCCGGGGCCGAACCGCCACA  <  NC_002947/4254411‑4254369                                                                                                                                                                                                       TGGCCACTTCACCGGGCGCTACGTCAGCCAACGACTTGCGCAGGATGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACAAGCGTCCAGATAACCAGCGACCTGTCACGGTTGCACGCCGGACGTCACCGCCAGGAACCGACTG                                                  >  7:335425/1‑149   GCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTG                                                >  7:44664/1‑149    CCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGG                                               <  7:217039/149‑1                              AACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGGCGTTGTGCCGACAGCTGCGTAGCTCG                     >  3:121152/1‑149                                                  CAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGGCGTTGTGCCGACAGCTGCGTAGCTCGCCGGGGCCGAACCGCCACA  <  4:121152/148‑1                                                               TTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGGCGTTGTGCCGACAGCTGCGTAGCTCGCCGGGGCCGAACCGCCAC   <  7:354351/134‑1                                                               TTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGGCGTTGTGCCGACAGCTGCGTAGCTCGCCGGGGCCGAACCGCCAC   >  8:354351/1‑134                                                                                                                                                                                                       TGGCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGCCGTCAGCGCCAGGATCCGACTGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4254222‑4254375 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgTTGTGCCGACAGCTGCGTAGCTCGCCGGGGCCGAACCGCCACA  <  NC_002947/4254411‑4254369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.