New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4305587	82 (1.390)	5 (0.090)	5/246	NT	6.2%	coding (468/840 nt)	PP_3777	hypothetical protein
	?	NC_002947	= 4305630	72 (1.270)					coding (425/840 nt)	PP_3777	hypothetical protein

TGTCATAGAGGTCACGCATGACACCGGCAATGCCGACCAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4305436‑4305587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctCGGATGGCTTCCTCGATGCACTACAGCGCATCGAGGCTGCCCAAGGGCTGTCGCTGGAAGCGATGTTCTATGGCGAGCGGACCTTGCGCAGGTTTTTCGAACGGGTGCCGAGCTACCTGAAGCCCGGAGGCAAGCTGATCATCGGG  <  NC_002947/4305630‑4305485                                                                                                                                                                                                                                                                                                            TGTCATAGAGGTCACGCATGACACCGGCAATGCCGACCAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGC                                                                                                                                                       <  3:15716/149‑1   TCATAGAGGTCACGCATGACACCGGCAATGCCGACCAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCC                                                                                                                                                     >  3:77903/1‑149     ATAGAGGTCACGCATGACACCGGCAATGCCGACCAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCT                                                                                                                                                    <  6:269508/148‑1                                  CGACCAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCTCGGATGGCTTCCTCGATGCACTACAGCGCA                                                                                                                      >  3:111287/1‑149                                      CAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCTACAGCCCTCGGATGGCTTCCTCGATGCACTACAGCGCATCGA                                                                                                                  <  2:141623/149‑1                                                            AGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCTCGGATGGCTTCCTCGATGCACTACAGCGCATCGAGGCTGCCCAAGGGCTGTCGCTG                                                                                            <  4:111287/149‑1                                                                                            CCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCTCGGATGGCTTCCTCGATGCACTACAGC                                                                                                                         <  7:165806/88‑1                                                                                            CCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCTCGGATGGCTTCCTCGATGCACTACAGC                                                                                                                         >  8:165806/1‑88                                                                                                                                                    GCCCTCGGATGGCTTCCTCGATGCACTACAGCGCATCGAGGCTGCCCAAGGGCTGTCGCTGGAAGCGATGTTCTATGGCGAGCGGACCTTGCGCAGGTTTTTCGAACGGGTGCCGAGCTACCTGAAGCCCGGAGGCAAGCTGATCATCG    >  1:41788/1‑149                                                                                                                                                      CCTCGGATGGCTTCCTCGATGCACTACAGCGCATCGAGGCTGCCCAAGGGCTGTCGCTGGAAGCGATGTTCTATGGCGAGCGGACCTTGCGCAGGTTTTTCGAACGGGTGCCGAGCTACCTGAAGCCCGGAGGCAAGCTGATCATCGGG  >  3:242483/1‑149                                                                                                                                                                                                                                                                                                            TGTCATAGAGGTCACGCATGACACCGGCAATGCCGACCAACGAATTCAGCCCGATGATCAGCTTGCCTCCGGGCTTCAGGTAGCTCGGCACCCGTTCGAAAAACCTGCGCAAGGTCCGCTCGCCATAGAACATCGCTTCCAGCGACAGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4305436‑4305587 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctCGGATGGCTTCCTCGATGCACTACAGCGCATCGAGGCTGCCCAAGGGCTGTCGCTGGAAGCGATGTTCTATGGCGAGCGGACCTTGCGCAGGTTTTTCGAACGGGTGCCGAGCTACCTGAAGCCCGGAGGCAAGCTGATCATCGGG  <  NC_002947/4305630‑4305485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.