New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 459682774 (1.250)5 (0.090) 5/238 NT 6.8% coding (2982/3627 nt) PP_4071 membrane protein
?NC_002947 = 4596876 68 (1.240)coding (2933/3627 nt) PP_4071 membrane protein

TTCCAGCTGCTCGATCACATCGGTACGGATCAGGGATCGCCCCTGCAAACCATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4596671‑4596827
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttccagcAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGACTTTGAAGCGTTCTTCGGGCCGAATGGGCGACTGCAGCAGTTCCAGGATCAATATCTGAAGCTTTTCCTCAAGGACAATCTGGAAGCC  <  NC_002947/4596876‑4596731
                                                                                                                                                                                                                                                                                                               
TTCCAGCTGCTCGATCACATCGGTACGGATCAGGGATCGCCCCTGCAAACCATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGT                                                                                                                                                            >  6:172754/1‑149
    AGCTGCTCGATCACATCGGTACGGATCAGGGATCGCCCCTGCAAACCATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTC                                                                                                                                                        <  4:113428/149‑1
        GCTCGATCACATCGGTACGGATCAGGGATCGCCCCTGCAAACCATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGC                                                                                                                                                    >  8:349107/1‑149
                           GATCAGGGATCGCCCCTGCAAACCATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGCAGCGCCTGGCAGAGCGCTA                                                                                                                                 >  7:49032/1‑149
                                                  CATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGCAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCC                                                                                                           >  7:132071/1‑148
                                                                  CAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGCAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGA                                                                                          <  8:49032/149‑1
                                                                      TTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGCAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGACTT                                                                                       <  8:132071/148‑1
                                                                           aTTGATGAAAACGTTCAGATATTGATCCTGCAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGCAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGACTTTGAAGC                                                                                 <  8:347903/148‑1
                                                                                                                                                       TCCAGCAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGACTTTGAAGCGTTCTTCGGGCCGAATGGGCGACTGCAGCAGTTCCAGGATCAATATCTGAAGCTTTTCCTCAAGGACAATCTGG       >  5:243222/1‑147
                                                                                                                                                          AGCAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGACTTTGAAGCGTTCTTCGGGCCGAATGGGCGACTGCAGCAGTTCCAGGATCAATATCTGAAGCTTTTCCTCAAGGACAATCTGGAAGCC  >  2:56870/1‑149
                                                                                                                                                                                                                                                                                                               
TTCCAGCTGCTCGATCACATCGGTACGGATCAGGGATCGCCCCTGCAAACCATTCTGCAAGGCTTCCAGATTGTCCTTGAGGAAAAGCTTCAGATATTGATCCTGGAACTGCTGCAGTCGCCCATTCGGCCCGAAGAACGCTTCAAAGTCTTCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4596671‑4596827
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttccagcAGCGCCTGGCAGAGCGCTACCCTTTCGTAGTCAGGGCACCCGACGCTTCGCTGGAAGACTTTGAAGCGTTCTTCGGGCCGAATGGGCGACTGCAGCAGTTCCAGGATCAATATCTGAAGCTTTTCCTCAAGGACAATCTGGAAGCC  <  NC_002947/4596876‑4596731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.