New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4600694	65 (1.100)	4 (0.070)	4/246	NT	6.3%	coding (578/1467 nt)	PP_4072	hypothetical protein
	?	NC_002947	= 4600711	56 (0.990)					coding (561/1467 nt)	PP_4072	hypothetical protein

GCAGGGTTTCGGCGTGGCGATGACATCCGCCAGCGGCGCAGGTTGCGGGCTCTCCACCGGAGCCTTGGGCGCATCGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4600615‑4600694 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctTGCCAACGGTATTGGCGAGCGCGATGCGCCCAAGGCTCCGGTGGAGAGCCCGCAACCTGCGCCGCTGGCGGATGTCATCGCCACGCCGAAACCCTGCTTGTCGGGCGGTAACGAGCGC  <  NC_002947/4600711‑4600594                                                                                                                                                                                                        GCAGGGTTTCGGCGTGGCGATGACATCCGCCAGCGGCGCAGGTTGCGGGCTCTCCACCGGAGCCTTGGGCGCATCGCGCTTGCCAACGGTATTGGCGAGCGCGATGCGC                                                                                           <  5:251066/109‑1 GCAGGGTTTCGGCGTGGCGATGACATCCGCCAGCGGCGCAGGTTGCGGGCTCTCCACCGGAGCCTTGGGCGCATCGCGCTTGCCAACGGTATTGGCGAGCGCGATGCGC                                                                                           >  6:251066/1‑109                                                                 TTGGGCGCATCGCGCTCGCCAATACCGTTGGCAAGCGCGATGCGCCCAAGGCTCCGGTGGAGAGCCCGCAACCTGCGCCGCTGGCGGATGTCATCGCCACGCCGAAACCCTGCTTGTCGGGCGGTAACGAGCGC  >  1:62894/1‑134                                                                 TTGGGCGCATCGCGCTCGCCAATACCGTTGGCAAGCGCGATGCGCCCAAGGCTCCGGTGGAGAGCCCGCAACCTGCGCCGCTGGCGGATGTCATCGCCACGCCGAAACCCTGCTTGTCGGGCGGTAACGAGCGC  <  2:62894/134‑1                                                                                                                                                                                                        GCAGGGTTTCGGCGTGGCGATGACATCCGCCAGCGGCGCAGGTTGCGGGCTCTCCACCGGAGCCTTGGGCGCATCGCGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4600615‑4600694 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgctTGCCAACGGTATTGGCGAGCGCGATGCGCCCAAGGCTCCGGTGGAGAGCCCGCAACCTGCGCCGCTGGCGGATGTCATCGCCACGCCGAAACCCTGCTTGTCGGGCGGTAACGAGCGC  <  NC_002947/4600711‑4600594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.