New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5199250	63 (1.070)	4 (0.070)	4/246	NT	5.6%	coding (537/912 nt)	PP_4579	LysR family transcriptional regulator
	?	NC_002947	= 5199274	74 (1.300)					coding (561/912 nt)	PP_4579	LysR family transcriptional regulator

TTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5199128‑5199250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAA  <  NC_002947/5199274‑5199132                                                                                                                                                                                                                                                                            TTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACG                                                                                                                       >  3:362729/1‑149       GACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATA                                                                                                                   <  4:362729/147‑1                        CGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGC                                                                                                                                                  >  8:195896/1‑99                                 GCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGAACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCC                                                                                                               >  5:113695/1‑125                                 GCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGAACCGGGACTATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCC                                                                                                               <  6:113695/125‑1                                                                                                                       ATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAA  <  5:185933/148‑1                                                                                                                       ATGCGCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAA  <  6:5385/148‑1                                                                                                                           GCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCT                 >  5:320746/1‑129                                                                                                                           GCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCT                 <  6:320746/129‑1                                                                                                                                                                                                                                                                            TTTCTTGACGTTATCTTGCAGACCGACTTGCTGCGCGAGCAATCGATCCGCAGCCTCGACCTGGCACGCTACCCAATGGGCTGGGTGGTGGCCGCAGGCGCCCACCAGCACCGGGACTATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5199128‑5199250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcgCTCGCGCCCAAGTTCGGCCAGCGACGCATAGTCCCGGTGCTGGTGGGCGCCTGCGGCCACCACCCAGCCCATTGGGTAGCGTGCCAGGTCGAGGCTGCGGATCGATTGCTCGCGCAGCAAGTCGGTCTGCAAGATAACGTCAA  <  NC_002947/5199274‑5199132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.