New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5230839 =	61 (1.030)	4 (0.070)	4/246	NT	7.0%	coding (280/327 nt)	PP_4609	membrane protein
	?	NC_002947	5230880 =	47 (0.830)					coding (239/327 nt)	PP_4609	membrane protein

GTTGGCTGCTGCTGATACTGTCGCTGGTGCTCAGCGTGCACCAGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5230991‑5230839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAGCAGCCAACCTGCAAAACGCAACAGGTGCAAGTGGCGCGGGCGCG  >  NC_002947/5230880‑5231027                                                                                                                                                                                                                                                                                                               GTTGGCTGCTGCTGATACTGTCGCTGGTGCTCAGCGTGCACCAGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTG                                                                                                                                                          <  4:54624/149‑1                                        ACCAGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGG                                                                                                                                                         >  5:7816/1‑111                                        ACCAGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGG                                                                                                                                                         <  6:7816/111‑1                                           AGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCG                                                                                                                                                      <  3:23206/111‑1                                           AGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCG                                                                                                                                                      >  4:23206/1‑111                                                                                            CGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCC                                                                                          >  5:355254/1‑122                                                                                            CGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCC                                                                                          <  6:355254/122‑1                                                                                                              GTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAG                                              >  5:360700/1‑148                                                                                                               TTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAGCA                                            <  6:360700/149‑1                                                                                                                                                      GCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAGCAGCCAACCTGCAAAACGCAACAGGTGCAAGTGGCGCGGGC     >  5:296941/1‑149                                                                                                                                                      GCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGT                                                                             <  1:262201/77‑1                                                                                                                                                      GCCGAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGT                                                                             >  2:262201/1‑77                                                                                                                                                         GAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAGCAGCCAACCTGCAAAACGCAACAGGTGCAAGTGGCGCGGGCGCG  >  1:362300/1‑149                                                                                                                                                         GAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAGCAGCCAACCTGCAAAACGCAACAGGTGCAAGTGGCGCGGGCGCG  >  8:282382/1‑149                                                                                                                                                                                                                                                                                                               GTTGGCTGCTGCTGATACTGTCGCTGGTGCTCAGCGTGCACCAGCGTGGCTGGGCCCTCGGCCTGGTGGAGTGGACCGCGGTGATGATGGCCGGGGTAACACTGTGGGTGTTCGGCCTGCCCTACCAGCCTCGTCTGCTGCTGGGCCTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5230991‑5230839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgAACACCCACAGTGTTACCCCGGCCATCATCACCGCGGTCCACTCCACCAGGCCGAGGGCCCAGCCACGCTGGTGCACGCTGAGCACCAGCGACAGTATCAGCAGCAGCCAACCTGCAAAACGCAACAGGTGCAAGTGGCGCGGGCGCG  >  NC_002947/5230880‑5231027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.