New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5566247	54 (0.910)	5 (0.090)	4/242	NT	8.7%	coding (1239/1899 nt)	mutL	DNA mismatch repair protein MutL
	?	NC_002947	= 5566288	54 (0.970)					coding (1198/1899 nt)	mutL	DNA mismatch repair protein MutL

CAGCACCAGGCCAACAGCATTCTCGGCCAGGATGTAGATACCCTTGAGCTGCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5566094‑5566247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaccCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGGCGCAGC  <  NC_002947/5566288‑5566141                                                                                                                                                                                                                                                                                                                CAGCACCAGGCCAACAGCATTCTCGGCCAGGATGTAGATACCCTTGAGCTGCGCCAGGGCATAGCCTAGC‑GGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATA                                                                                                                                                          <  7:51827/149‑1    CACCATGCCAACAGCATTCTAGGCCAGGATGTACATACCCTTGAGCTGCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCACTGCCTTTCGGCCAGTGCCGTCTCAACCGCAGCACCTGTTTACAGAGGCTTATAGAACTCGAGATAC                                                                                                                                                         >  8:40414/1‑148                       TCGGCCAGGATGTAGATACCCTTGAGCTGCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACCCCACGTCCCTCGCAGCC                                                                                                                                     >  8:314904/1‑149                         GGCCAGGATGTAGATACCCTTGAGCTGCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACC                                                                                                                                                      <  1:330379/130‑1                         GGCCAGGATGTAGATACCCTTGAGCTGCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACC                                                                                                                                                      >  2:330379/1‑130                                                   GCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTG                                                                                                         >  5:15145/1‑149                                                       CAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATC                                                                                                     <  6:15145/149‑1                                                       CAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATC                                                                                                     <  6:381674/149‑1                                                        AGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCG                                                                                                    <  7:314904/149‑1                                                                                                                                                    ATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGG        >  5:239382/1‑149                                                                                                                                                    ATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCT                 >  1:154943/1‑140                                                                                                                                                    ATACACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCT                 <  2:154943/140‑1                                                                                                                                                        ACCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGGCG      >  4:179065/1‑147                                                                                                                                                         CCCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGGCGCAG   <  6:356870/149‑1                                                                                                                                                          CCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGGCGCAGC  <  4:239564/149‑1                                                                                                                                                          CCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGGCGCAGC  >  7:345476/1‑149                                                                                                                                                                                                                                                                                                                CAGCACCAGGCCAACAGCATTCTCGGCCAGGATGTAGATACCCTTGAGCTGCGCCAGGGCATAGCCTAGCGGGGGAATGTCGCCCTGGCTTTCGGGCAGTGCCGTCGCAGGCGCAGCACCTGTTTCCAGCGGCTTATAGAACTCGCGATACACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5566094‑5566247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atacaccCCACGTCCCTCGCAGCCGCTGCCGGCCGCAGAGGCACAGGCGGTGTATCGCGAGTTCTATAAGCCGCTGGAAACAGGTGCTGCGCCTGCGACGGCACTGCCCGAAAGCCAGGGCGACATTCCCCCGCTAGGCTATGCCCTGGCGCAGC  <  NC_002947/5566288‑5566141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.