New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5701083	57 (0.960)	4 (0.070)	3/244	NT	6.2%	coding (1561/1680 nt)	phaA	poly(3‑hydroxyalkanoate) polymerase
	?	NC_002947	= 5701143	67 (1.190)					coding (1621/1680 nt)	phaA	poly(3‑hydroxyalkanoate) polymerase

TCGAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5700931‑5701083 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgcCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCATGAAACGTGC  <  NC_002947/5701143‑5700996                                                                                                                                                                                                                                                                                                               TCGAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGG                                                                                                                                                          >  2:73105/1‑149  CGAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGT                                                                                                                                                         >  5:265463/1‑149   GAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTT                                                                                                                                                        <  3:373768/149‑1   GAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTT                                                                                                                                                        >  6:205923/1‑149   GAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTT                                                                                                                                                        >  7:32997/1‑149     ATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGC                                                                                                                                                      <  5:315958/149‑1                                                                      GTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGCCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAAC                                                                                     >  8:266720/1‑149                                                                         TCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGCCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCA                                                                                   <  7:266720/148‑1                                                                         TCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGCCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCA                                                                                   <  7:45314/148‑1                                                                           ATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGCCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCA                                                                                <  8:32997/149‑1                                                                                                                                                    GGTTGCCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCATGAAA       <  2:73880/149‑1                                                                                                                                                     GTTGCCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCATGAAAC      <  2:330129/149‑1                                                                                                                                                         CCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCTGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCATGAAACGTGC  >  6:265463/1‑149                                                                                                                                                         CCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCAT           <  7:71896/140‑1                                                                                                                                                         CCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCAT           >  8:71896/1‑140                                                                                                                                                         CCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGAGCAACCACCACGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACAGGTCATGAAACGTGC  >  3:244462/1‑149                                                                                                                                                                                                                                                                                                               TCGAATTCGTACTGTCCAACAGCGGGCATATCCAGAGCATCCTCAACCCGCCGGGCAACCCGAAGGCACGTTTCATGACCGGTGCCGATCGCCCGGGTGACCCGGTGGCCTGGCAGGAAAATGCCATCAAGCATGCAGACTCCTGGTGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5700931‑5701083 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttgcCCAGGCGGGTCGGTGCCTTTTTCAGCGCGCCGGCACGCTCGCCCAGCCAACTCTGCCAGTGCAACCACCAGGAGTCTGCATGCTTGATGGCATTTTCCTGCCAGGCCACCGGGTCACCCGGGCGATCGGCACCGGTCATGAAACGTGC  <  NC_002947/5701143‑5700996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.