New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5914157 =	32 (0.540)	10 (0.220)	8/200	NT	25.6%	intergenic (+49/+104)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase
	?	NC_002947	5914253 =	33 (0.710)					intergenic (+145/+8)	spuI/argA	glutamylpolyamine synthetase/amino acid N‑acetyltransferase

GGCTGCCGGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5914331‑5914157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACGAA  >  NC_002947/5914253‑5914398                                                                                                                                                                                                                                                                                                                                    GGCTGCCGGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAATTAACAGGCTTCAGCCATCGAAATAACCCTGCGG                                                                                                                                                                               >  6:97487/1‑149    TGCCGGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAG                                                                                                                                                                            >  6:156412/1‑149       CGGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGG                                                                                                                                                                         <  5:132275/149‑1                  GCTGCGCTGTACAACTCCCTCCGCAATTCGAACATTTTCGACACGCCCCTGTACCCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGCCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCG                                                                                                                                                              <  4:216060/149‑1                       GCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTAGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAG                                                                                                                                                         >  6:284693/1‑149                        CTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCACGCCCGCtcccgca                                                                                                                                                        <  2:314337/149‑8                           tcCAACGACCAGCGCAATTCTAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGC                                                                                                                                                      <  6:264921/146‑1                                                                                                  GCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGC                                                                              >  8:165665/1‑149                                                                                                  GCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGAGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGCGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGC                                                                              >  4:246421/1‑149                                                                                                    CCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCG                                                                            >  2:252342/1‑149                                                                                                      GCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGC                                                                          >  7:135144/1‑149                                                                                                           CACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTT                                                                                                   <  8:54185/119‑1                                                                                                           CACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTT                                                                                                   >  7:54185/1‑119                                                                                                                GTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCA                                                               <  7:165665/149‑1                                                                                                                    GTCACAGGCTTCAGCCTTCGAAATTACCCTGCGAGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCC                                                           <  3:246421/149‑1                                                                                                                                    TTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAG                                                                                                                                                         <  4:253007/40‑1                                                                                                                                    TTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAG                                                                                                                                                         >  3:253007/1‑40                                                                                                                                           TTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGC                                    <  8:135144/149‑1                                                                                                                                             ACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCATGCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGC                                    <  1:252342/148‑1                                                                                                                                                CTGGGGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAAC                               <  5:264921/149‑1                                                                                                                                                    GGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCA                                                          >  7:102962/1‑118                                                                                                                                                    GGGAGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCA                                                          <  8:102962/118‑1                                                                                                                                                       AGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCG                                           >  7:113549/1‑130                                                                                                                                                       AGCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCG                                           <  8:113549/130‑1                                                                                                                                                        GCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCG                                   >  2:123248/1‑137                                                                                                                                                        GCGGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCG                                   <  1:123248/137‑1                                                                                                                                                          GGGCGTGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAG                     <  5:370860/149‑1                                                                                                                                                               TGCCCGCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGC                <  5:147738/149‑1                                                                                                                                                                    GCGAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGT           >  8:254198/1‑149                                                                                                                                                                      GAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCA         <  3:323601/149‑1                                                                                                                                                                      GAAGAGGGCGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGT           >  1:184721/1‑147                                                                                                                                                                            GGCGGCCCAGGCTTACAGGGGATTCTCGAAAATCTTCTAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGACGGCA‑GCCGCTCCACGCCACTCGGCGAAAAGCCGCGCTCGCGGAACCAGTGCGCACTGCGCGTAGTCAGCACG    >  7:313939/1‑148                                                                                                                                                                              CGGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACGAA  >  7:43741/1‑148                                                                                                                                                                                                                                                                                                                                    GGCTGCCGGCGGCGCGGGCTTCGCTGTACAACTACCAGCGCAATTCGAAGATTTTCGAGAAGCCCCTGTAAGCCTGGGCCGCCCTCTTCGCGGGCACGCCCGCTCCCACAGGTAAGTCACAGGCTTCAGCCTTCGAAATTACCCTGCGGGAGCGGGCGTGCCCGCGAAGAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5914331‑5914157 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcgtgcccgcgaagagggcgGCCCAGGCTTACAGGGGCTTCTCGAAAATCTTCGAATTGCGCTGGTAGTTGTACAGCGAAGCCCGCGCCGCCGGCA‑GCCGCTCCACGCCACTCGGCGCAAAGCCGCGCTCGCGGAACCAGTGCGCAGTGCGCGTAGTCAGCACGAA  >  NC_002947/5914253‑5914398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.