New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5952647	71 (1.200)	4 (0.070)	4/236	NT	5.5%	coding (310/2184 nt)	ppk	polyphosphate kinase
	?	NC_002947	= 5952674	71 (1.300)					coding (283/2184 nt)	ppk	polyphosphate kinase

CAGTAGCGGCGGCGGATGAAGCGGATCTGGTGCTTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5952493‑5952647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggcctgAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTGAGCTGG  <  NC_002947/5952674‑5952530                                                                                                                                                                                                                                                                                                              CAGTAGCGGCGGCGGATGAAGCGGATCTGGTGCTTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCC                                                                                                                                                         >  3:21291/1‑149   GTAGCGGCGGCGGATGAAGCGGATCTGGTGCTTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGG                                                                                                                                                       <  7:97897/149‑1    gAGCGGCGGCGGAGGAAGCGGATCTGGTGCGTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGC                                                                                                                                                      <  8:338880/148‑1    TAGCGGCGGCGGATGAAGCGGATCTGGTGCTTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGC                                                                                                                                                      <  4:268588/149‑1                     GCGGATCTGGTGCTTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGCCTGAAGAAGCAGATCAA                                                                                                                                     >  6:164844/1‑149                                             AGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCG                                                                                                              <  5:164844/148‑1                                                                                             GTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGG                                                                                                                                                       <  1:58110/59‑1                                                                                             GTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGG                                                                                                                                                       >  2:58110/1‑59                                                                                                                 GCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAAC                                                                                                                       >  5:349092/1‑71                                                                                                                 GCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAAC                                                                                                                       <  6:349092/71‑1                                                                                                                                                   GCCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTG        <  2:30736/148‑1                                                                                                                                                    CCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTGAG      <  6:23843/149‑1                                                                                                                                                    CCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGC           <  3:54553/144‑1                                                                                                                                                    CCGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGC           >  4:54553/1‑144                                                                                                                                                     CGGCCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTGAGC     <  1:313519/149‑1                                                                                                                                                      GGCCTGAAGAAGCAGATCAACTTCGCCCGTGCACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTGAGCT    <  2:230329/149‑1                                                                                                                                                        CCTGAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTGAGCTGG  <  5:350370/149‑1                                                                                                                                                                                                                                                                                                              CAGTAGCGGCGGCGGATGAAGCGGATCTGGTGCTTTTCCAGCTCAGGCAGCAGCACGTCGTTGAGGATCGCGTACTGGCGCTCTACCTCGATGTGCACCAGTTCGCTGATACGCGCTAGCGCCTGGTGCGGCTGCAGGCCATCGGCGCCGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5952493‑5952647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggcctgAAGAAGCAGATCAACTTCGCCCGTGAACAGGCCGGCGCCGATGGCCTGCAGCCGCACCAGGCGCTAGCGCGTATCAGCGAACTGGTGCACATCGAGGTAGAGCGCCAGTACGCGATCCTCAACGACGTGCTGCTGCCTGAGCTGG  <  NC_002947/5952674‑5952530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.