New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5985929 | 63 (1.070) | 4 (0.070) | 4/246 | NT | 6.4% | coding (196/987 nt) | PP_5245 | AraC family transcriptional regulator |
? | NC_002947 | = 5985981 | 57 (1.000) | coding (248/987 nt) | PP_5245 | AraC family transcriptional regulator |
CGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5985781‑5985929 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGC < NC_002947/5985981‑5985926 CGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCC > 2:255809/1‑148 CGATGTGTTACTGCTGGATGTCACCGGTCAAAAGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATAACGGCTGCTGACCTTGGCCGAGGCGCAAGCAGTGGTACGCGGCTCCTGCGCCCAGAAGGTAGTGTCC > 8:134209/1‑148 CTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCCGCCCGGCACCAGC > 3:265535/1‑148 CAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGG > 2:133013/1‑149 CGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGG < 4:265535/149‑1 GGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCCGCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGC < 1:133013/149‑1 CGATGTGTTACTGCTGGATGTCACCGGTCCCATGGATGCATTCGCCATCGCCAACCGGTTCTTGCCTGCAGCACGGCAATATCGGCTGCTGACCTTGGCCGAGGGGCAAGCAGTGGTACGCGGCTCATGCGGCCTGAAGGTAGTGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5985781‑5985929 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgCCCGGCACCAGCAACAGGTCGACGGCCTCCGGCAAGTCTTCCAGGCGCCGGTCGGC < NC_002947/5985981‑5985926 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |