New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6019270	43 (0.730)	3 (0.060)	3/210	NT	7.0%	intergenic (‑71/+74)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase
	?	NC_002947	= 6019300	45 (0.930)					intergenic (‑101/+44)	dadX/dadA‑II	alanine racemase/D‑amino acid:quinone oxidoreductase

TTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6019102‑6019270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcttgcccgctcccacaggAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACAA  <  NC_002947/6019300‑6019153                                                                                                                                                                                                                                                                                                                                TTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCG                                                                                                                                                                          >  1:52308/1‑149    ATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTTGATTATTCGCGGGC                                                                                                                                                                       <  6:8791/149‑1    ATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGC                                                                                                                                                                       >  6:11481/1‑149      CACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTT                                                                                                                                                                     >  8:43398/1‑149      CACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTT                                                                                                                                                                     >  2:215035/1‑149       ACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTG                                                                                                                                                                    >  3:338250/1‑149        CGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGC                                                                                                                                                                   <  3:377202/149‑1                 CTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCAGGGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCGTTTTGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCC                                                                                                                                                            >  1:83849/1‑148                  TTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCTGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCAC                                                                                                                                                         >  7:274792/1‑149                  TTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCA                                                                                                                                                          >  2:281613/1‑148                    TGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAG                                                                                                                                                       >  7:252613/1‑149                    TGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACA                                                                                                                                                        <  7:150621/148‑1                                                GTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCC                                                                                                                                                           >  4:249439/1‑117                                                GTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGGTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCC                                                                                                                                                           <  3:249439/117‑1                                                            CA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGA                                                                                                               <  1:281613/149‑1                                                                 GCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGC                                                                                                             >  7:361586/1‑147                                                                 GCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGC                                                                                                             <  8:361586/147‑1                                                                                                                                                     CGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATC                                                                                         <  5:102967/83‑1                                                                                                                                                     CGGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATC                                                                                         >  6:102967/1‑83                                                                                                                                                      GGGCTTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGAC                      <  3:224374/149‑1                                                                                                                                                        GCTTGCCCGCTCCCACAGGACCACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCT                    >  7:43398/1‑149                                                                                                                                                          TTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCC                  >  5:11481/1‑149                                                                                                                                                          TTGCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTC                   >  8:13665/1‑148                                                                                                                                                            GCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAA                                                           <  4:235109/106‑1                                                                                                                                                            GCCCGCTCCCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAA                                                           >  3:235109/1‑106                                                                                                                                                                    CCACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGC         <  4:247347/148‑1                                                                                                                                                                      ACAGGAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGC       >  2:83849/1‑148                                                                                                                                                                          GAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACAA  >  4:338250/1‑149                                                                                                                                                                                                                                                                                                                                TTGATCACGGCGAGGGCTTTGGCACCCGTCAGTTCACGGGCCAGACGGTAGTTGTGGCGCA‑GGGCCTGGAGGTCGATCAGGGCGCGGGCGGGACGCATAGCGGCTGCCTTATGGTGGTTCGGGTTGAAATCGGTGGTGGATTATTCGCGGGCTTGCCCGCTCCCACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6019102‑6019270 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcttgcccgctcccacaggAACACCACCGCTTTTGAAAGCTGTGCACGACCTGTGGGAGCGGGCAAGCCCGCGAATAATCCACCACCGATTTCAACCCGAACCACCATAAGGCAGCCGCTATGCGTCCCGCCCGCGCCCTGATCGACCTCCAGGCCCTGCGCCACAA  <  NC_002947/6019300‑6019153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.