| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 380855 | 23 (0.390) | 4 (0.080) | 4/210 | NT | 14.6% | intergenic (+45/+64) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | = 380889 | 28 (0.580) | intergenic (+79/+30) | gbcB/PP_0317 | glycine‑betaine dioxygenase subunit/methyl‑accepting chemotaxis transducer | |||||
GGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGC > NC_002947/380708‑381002 | ggAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAg > 5:132659/1‑149 (MQ=255) gAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAgg > 4:164062/1‑149 (MQ=255) gAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAgg < 5:82308/149‑1 (MQ=255) aaaTGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAggg < 7:285083/149‑1 (MQ=255) aaTGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAggg < 4:113353/148‑1 (MQ=255) tGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggtt > 6:365351‑M1/1‑143 (MQ=255) gAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCAt < 2:371865/148‑1 (MQ=255) cacaACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCt < 3:164062/149‑1 (MQ=255) ggcggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCtt > 4:54988/1‑148 (MQ=255) cggGATTACCGAAGAGGACGAAGCTGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAg < 1:323818/149‑1 (MQ=255) cggGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAg < 7:351453/149‑1 (MQ=255) ccGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCg < 1:59935/148‑1 (MQ=255) ccGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCg < 2:233112/148‑1 (MQ=255) cGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGt < 1:166398/149‑1 (MQ=255) cGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGt > 7:12096/1‑149 (MQ=255) gACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccct < 1:139750‑M1/149‑36 (MQ=255) cGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgt > 6:132659‑M2/1‑146 (MQ=255) cGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagc < 5:365351‑M1/149‑44 (MQ=255) gAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcg < 5:39522‑M1/149‑45 (MQ=255) aGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgg > 5:283319‑M2/1‑138 (MQ=255) ggCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCGGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggc < 6:354300‑M1/149‑48 (MQ=255) ggCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgggc > 3:54988‑M2/1‑136 (MQ=255) cTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCACCCCCAGGGTCATCGCTATGTTCAGGAC‑TGCGGGGAACCAtgtgggagcgggcgt < 5:37037‑M2/149‑16 (MQ=255) aTCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgggcgtgccc < 5:207075‑M2/149‑20 (MQ=255) ccTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgggcgtgcccgc < 1:17536‑M2/149‑22 (MQ=255) tgctgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCt > 5:192185/1‑149 (MQ=255) tgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGGC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTc > 3:181703/1‑148 (MQ=255) tgcAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGTGTGCCCGCGACTGCTTc > 4:52242/1‑148 (MQ=255) cGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCACCCACAGGGTCATAGCTATCTTAAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACGGCTTCTAGGTGCGGaa > 2:337844/1‑149 (MQ=255) gAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAAc > 4:94897/1‑149 (MQ=255) cGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGCACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGc > 3:243607/1‑149 (MQ=255) ggATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtg < 4:121159‑M2/97‑5 (MQ=255) ggATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGCCTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGc > 3:263167/1‑148 (MQ=255) aTTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCGTCTAGGTGc > 1:364807/1‑124 (MQ=255) tGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCCCCCCCCCAACCCCACGGTCCACGCGATATTAAGGAC‑GGCGGGGGACCGTTTGGGGTCCGGGGGGCCCGCCACAGCGTGGAAGTGCGGCACCCGGCGACCACGGCCAttaggtaa > 6:44716/1‑142 (MQ=255) gATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTAc > 7:353715/1‑149 (MQ=255) gTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAG‑TGCGGTGAACCTtgtgggagcgggcgtgccc > 1:147680‑M2/1‑75 (MQ=255) ccAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGgcgc > 5:242714/1‑149 (MQ=255) ggCTTCTCCGGGGGCCCGCCCCCCCCCCCGGGGCCATCGC‑AACTTCCCGCCGGGCGGTCACCTTGGGGGGGGGGGGCGGCCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCt < 3:94897/149‑1 (MQ=255) gcgGGCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacagg < 1:17536‑M1/149‑129 (MQ=255) gggCACGCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggat < 5:207075‑M1/149‑131 (MQ=255) gggCACGCCCGCTCCCACAaggttcaccgcactcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccac > 1:147680‑M1/1‑19 (MQ=255) aCGCCCGCTCCCACAtggttccccgcagtcctgaacatagcgatgaccctgggggtgcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtag < 5:37037‑M1/149‑135 (MQ=255) gCCCGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagcc > 3:54988‑M1/1‑13 (MQ=255) gCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagccggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagcc < 6:354300‑M2/149‑103 (MQ=255) ccGCTCCCACAaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccct > 5:283319‑M1/1‑11 (MQ=255) ccGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGt > 6:261501/1‑149 (MQ=255) cGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctc < 5:39522‑M2/149‑106 (MQ=255) gCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcg < 5:365351‑M2/149‑107 (MQ=255) gCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCt > 4:32044/1‑149 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATg < 5:261501/149‑1 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATg > 6:246076/1‑149 (MQ=255) ccACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATg > 2:110872/1‑149 (MQ=255) ccACAGGGTCATCGCTATCTTCAGCAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTCCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACACCACGGCACTCGCCGCGCTGGTCTGATg > 3:80250/1‑149 (MQ=255) caccGGGGCATCGCTATCTTCAGGCC‑TGCGGTGAACGTTGGGGGAGGGGGTGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgc < 3:52242/149‑1 (MQ=255) cacaaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatcc < 4:121159‑M1/97‑94 (MQ=255) cacaGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATgc > 6:271111/1‑149 (MQ=255) acaaggttcaccgcagtcctgaagatagcgatgaccctgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttcg > 6:132659‑M1/1‑3 (MQ=255) aGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTtgtgggagcgggcgtgcccgcgaagaagccagactggccactggatcagtaatcgatccgcacatcccctttcggcacgctgcagcacgacaggatgtagccctcggcttcgtc < 1:139750‑M2/149‑115 (MQ=255) | GGAAATGGAGCACAACGGCGGGATTACCGAAGAGGACGAAGCCGAGGGCTACATCCTGTCGTGCTGCAGCGTGCCGAAAGGGGATGTGCGGATCGATTACTGATCCAGTGGCCAGTCTGGCTTCTTCGCGGGCACGCCCGCTCCCACAGGGTCATCGCTATCTTCAGGAC‑TGCGGTGAACCTTGTGGGAGCGGGCGTGCCCGCGACTGCTTCTAGGTGCGGAACCGGGCTACCA‑GGCCATTGAGGTCTACCGCCAGGCGCGACAGCTCGGCACTCGCCGCGCTGGTCTGATGCGC > NC_002947/380708‑381002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |