New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2794768 =	44 (0.740)	3 (0.050)	3/248	NT	5.6%	coding (611/735 nt)	PP_2447	hypothetical protein
	?	NC_002947	2794820 =	58 (1.010)					coding (663/735 nt)	PP_2447	hypothetical protein

GAGCGAGCCGCGCTATGCGGTGTTGATGGGCTATGACCGTTACAAGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCG  >  NC_002947/2794622‑2794915                                                                                                                                                   |                                                                                                                                                    ccacacggactgtgcaataagcacaaatcctgtgggcgcgggcttgccggcgaagaagccggcacaggcaacgctattcgttcaggctattgaccgcctgcttcgccgcaatctcttgcccggccttggccaattcatccgcagcaTGc                                                                                                                                                   >  1:150826‑M1/147‑149 (MQ=255)    cgagcCGCGCTATGCGGTGTTGATGGGCTATGACCGTTACAAGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGc                                                                                                                                                >  4:65881/1‑149 (MQ=255)                                  tGACCGTTACAAGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATc                                                                                                                  <  5:150358/149‑1 (MQ=255)                                   gACCGTTACAAGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCg                                                                                                                 >  6:131831/1‑149 (MQ=255)                                          gcttgcaggcgaagaagccggcacaggcaacgctattcgttcaggctattgaccgcctgcttcgccgcaatctcttgcccggccttggccaattcatccgcagcaTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCgg                                                                                                          <  5:350026‑M1/44‑1 (MQ=255)                                          aCAAGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCgg                                                                                                          >  5:309523/1‑149 (MQ=255)                                            aaGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGAACACCAGCggtg                                                                                                        >  1:319329/1‑149 (MQ=255)                                               cagcGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCTTCGTCATGGGAGAATCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGtt                                                                                                     <  3:1867/149‑1 (MQ=255)                                                agcGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTg                                                                                                    >  1:50419/1‑149 (MQ=255)                                                 ggcgaagaagccggcacaggcaacgctattcgttcaggctattgaccgcctgcttcgccgcaatctcttgcccggccttggccaattcatccgcagcaTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGc                                                                                                   >  2:12959‑M1/99‑149 (MQ=255)                                                     gTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCAtgc                                                                                               <  2:50419/149‑1 (MQ=255)                                                       gaagccggcacaggcaacgctattcgttcaggctattgaccgcctgcttcgccgcaatctcttgcccggccttggccaattcatccgcagcaTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCAtgctg                                                                                             >  6:350026‑M1/93‑149 (MQ=255)                                                           ctgcGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCgg                                                                                          <  5:131831/148‑1 (MQ=255)                                                           ctgcGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGa                                                                                         <  2:206715/149‑1 (MQ=255)                                                           ctgcGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGa                                                                                         >  6:104758/1‑149 (MQ=255)                                                            tgcGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATc                                                                                                                  <  8:73106/123‑1 (MQ=255)                                                            tgcGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATc                                                                                                                  >  7:73106/1‑123 (MQ=255)                                                                       aTGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGcc                                                                               >  3:374471/1‑147 (MQ=255)                                                                                cggcAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCa                                                                    <  4:374471/149‑1 (MQ=255)                                                                                   cAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGACGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAaga                                                                 <  6:309523/149‑1 (MQ=255)                                                                                    aGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTgg                                                                                 <  6:288313/132‑1 (MQ=255)                                                                                    aGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGAGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTgg                                                                                 >  5:288313/1‑132 (MQ=255)                                                                                      gTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGAt                                                              >  6:235577/1‑149 (MQ=255)                                                                                         aTGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTgc                                                           >  8:305817/1‑149 (MQ=255)                                                                                             cATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTgcggc                                                        >  3:77348/1‑148 (MQ=255)                                                                                                tCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAg                                                    >  5:363420/1‑149 (MQ=255)                                                                                                       aTTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCgg                                             <  3:65881/149‑1 (MQ=255)                                                                                                        tttGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAag                                                                  <  8:47093/127‑1 (MQ=255)                                                                                                        tttGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAag                                                                  >  7:47093/1‑127 (MQ=255)                                                                                                           gCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCaa                                         >  3:352107/1‑149 (MQ=255)                                                                                                             aTCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCaa                                         >  5:106950/1‑147 (MQ=255)                                                                                                                      ggAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAAc                               <  5:104758/148‑1 (MQ=255)                                                                                                                        agaAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGaa                            >  1:17832/1‑149 (MQ=255)                                                                                                                        agaAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGaa                            >  4:103206/1‑149 (MQ=255)                                                                                                                          aaGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGaa                            >  7:128044/1‑147 (MQ=255)                                                                                                                           aGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATa                          <  6:106950/148‑1 (MQ=255)                                                                                                                               ggggAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGtt                     >  2:121109/1‑149 (MQ=255)                                                                                                                               ggggAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGtt                     <  6:363420/149‑1 (MQ=255)                                                                                                                                gggAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCggg                                                                      <  2:90437/99‑1 (MQ=255)                                                                                                                                gggAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCggg                                                                      >  1:90437/1‑99 (MQ=255)                                                                                                                                gggAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTg                    >  8:7919/1‑149 (MQ=255)                                                                                                                                 ggAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGc                   <  1:314104/149‑1 (MQ=255)                                                                                                                                       gggCAGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGc             >  8:288541/1‑149 (MQ=255)                                                                                                                                        ggCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGcc            >  5:194950/1‑149 (MQ=255)                                                                                                                                         gCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGaa                            <  1:13574/132‑1 (MQ=255)                                                                                                                                         gCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGaa                            >  2:13574/1‑132 (MQ=255)                                                                                                                                           ggTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGCACGAATAGCGTTGCCTGTGCCGGc         >  8:8433/1‑149 (MQ=255)                                                                                                                                             tGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGctt       >  5:68696/1‑149 (MQ=255)                                                                                                                                                tGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGcttctt    >  6:298192/1‑149 (MQ=255)                                                                                                                                                tGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGcttctt    >  3:91388/1‑149 (MQ=255)                                                                                                                                                 ggTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCttcttc   >  6:204546/1‑149 (MQ=255)                                                                                                                                                  gTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCg  >  2:337714/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GAGCGAGCCGCGCTATGCGGTGTTGATGGGCTATGACCGTTACAAGCAGCGGGTGCTGCTGCGCTCGGGCATGCACCGGCGGCAGGTGATGGCATTCGATGAATTTGCATCGGCATGGGAGAAGCAGGGGAGTTGGGCGGTGCTGGTGCAGCCACCGCGGCAACTGCCGGCCCAGGTTGATCGCCAGCGGTGGTTGCATGCTGCGGATGAATTGGCCAAGGCCGGGCAAGAGATTGCGGCGAAGCAGGCGGTCAATAGCCTGAACGAATAGCGTTGCCTGTGCCGGCTTCTTCG  >  NC_002947/2794622‑2794915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.