| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4551973 | 22 (0.370) | 5 (0.110) | 3/190 | NT | 22.1% | intergenic (+67/+114) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
| ? | NC_002947 | = 4552024 | 19 (0.430) | intergenic (+118/+63) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family | |||||
AAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCAC > NC_002947/4551827‑4552119 | aaaTGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCCCCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCg > 7:54124‑M1/1‑147 (MQ=255) tGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCCGGCCGCACAGc < 5:88328/149‑1 (MQ=255) gAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGATTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGc < 1:284570/148‑1 (MQ=255) gAGGAACAGGATACCGGCAAGCCGTTCCTGAACTGGCCGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTCAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGct < 2:312507/148‑2 (MQ=255) gCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGccc > 8:42723/1‑149 (MQ=255) gCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGccc > 1:203214/1‑149 (MQ=255) cacaGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGcccc < 2:203214/149‑1 (MQ=255) caGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTAGCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCcag < 8:269410/149‑1 (MQ=255) gATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCcagcag < 3:204169/149‑1 (MQ=255) aTACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGt < 7:4194/149‑1 (MQ=255) gCAAGCCGTACCTGAAGTGGACGAAGGATCGGCTTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGGCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGACCCAGCAGTCTTTGc < 2:216723/149‑1 (MQ=38) gCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGc < 2:318461/149‑1 (MQ=255) ccGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTCACGCGGCCCCTGAGGGAGCGGCCTTGTTTCGCGATCGGGCCCCACAGCGCCCCCAGCAGACTTTGCCGCGa > 8:292508/1‑149 (MQ=255) cGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGAt < 1:177627/149‑1 (MQ=255) ccTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACa < 1:250626/148‑1 (MQ=255) gACGCAGGATCCGCGTAACCCCTACCGGGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACTGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAgg < 2:8363/149‑1 (MQ=255) cGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCtgtgcggcc > 5:126991‑M1/1‑105 (MQ=255) cGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCtgtgcggcc < 6:126991‑M1/114‑10 (MQ=255) gCAGGATCCGCGTAACCGCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGc < 4:364711/149‑1 (MQ=255) gATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgct > 4:307190‑M1/1‑100 (MQ=255) gATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGa > 5:335737/1‑140 (MQ=255) gATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGa < 6:335737/140‑1 (MQ=255) gATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGc > 5:191073/1‑148 (MQ=255) gcgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcg > 1:111678‑M2/1‑146 (MQ=255) cgTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcgg > 7:42723‑M2/1‑145 (MQ=255) taagcgcTACGGTGCGGCACGTTGAAGCGGGTCAGCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGGGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGTTACAGACATCGAGGGGCCGCTTCGCGGcc < 7:292508/143‑1 (MQ=38) aCCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggccc < 3:307190‑M1/148‑59 (MQ=255) ccccTTCCGTGAGGCCTGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccga < 8:54124‑M1/149‑61 (MQ=255) gCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGcc < 5:337864/122‑1 (MQ=255) gCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGcc > 6:337864/1‑122 (MQ=255) cGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCTATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGc < 1:209827/105‑1 (MQ=255) cGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGc > 2:209827/1‑105 (MQ=255) tCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaacaggcctcacggaagggg < 8:54124‑M2/149‑90 (MQ=255) gggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggt < 3:307190‑M2/148‑91 (MQ=255) ggCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGc > 8:233865/1‑144 (MQ=255) ccGCgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacg > 7:42723‑M1/1‑4 (MQ=255) cgcgaagcggcccctcgatgtctgtatcgcggcaaagactgctggggccgctgtgcggcccgatcgcgacacaaggccgctcccacaggggccgcgtcagctgttcaggcggtgacccgcttcaactggcctcacggtaggggttacgc > 1:111678‑M1/1‑3 (MQ=255) | AAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAG‑CTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCACAGCGGCCCCAGCAGTCTTTGCCGCGATACAGACATCGAGGGGCCGCTTCGCGGCCCGATCGCGACACAAGGCCGCTCCCACAAAAAGACCACGTCCACCTGGAATGCCGGATCACGGCTCCAGCCCGATCCCCCGCAAGATCAC > NC_002947/4551827‑4552119 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |