New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4586029	13 (0.220)	23 (0.430)	18/234	NT	68.8%	intergenic (+112/+103)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase
	?	NC_002947	= 4586109	9 (0.170)					intergenic (+192/+23)	PP_4061/PP_4063	hypothetical protein/long‑chain fatty acid‑‑CoA ligase

GACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑G‑GTAAACCCGCTCCTACCAGGGA‑CGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAC  >  NC_002947/4585882‑4586103                                                                                                                                                    |                                                                               gACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTt                                                                               >  4:175592‑M1/1‑148 (MQ=255)    ccgccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgc                                                                            <  8:33489‑M1/149‑5 (MQ=255)    ccgccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgc                                                                            >  3:127632‑M1/1‑145 (MQ=255)     cgccgAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcg                                                                           >  2:103978‑M1/1‑144 (MQ=255)         gAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggt                                                                        >  5:230591‑M1/1‑140 (MQ=255)            ccAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaac                                                                    <  4:338182‑M1/149‑13 (MQ=255)             cAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacc                                                                   <  5:43722‑M1/149‑14 (MQ=255)               ggAGCCACCGGTGAAGGCGTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccg                                                                 <  2:303537‑M1/149‑16 (MQ=255)                 aGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgct                                                               <  6:215942‑M1/149‑18 (MQ=255)                  gCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctc                                                              <  3:175592‑M1/149‑19 (MQ=255)                         gTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccag                                                       >  3:99872‑M1/1‑124 (MQ=255)                                 ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtg                                               >  3:121726‑M1/1‑116 (MQ=255)                                 ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtg                                               >  8:139934‑M1/1‑116 (MQ=255)                                 ttAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtg                                               >  2:3512‑M1/1‑116 (MQ=255)                                     gggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccgg                                           >  6:157356‑M1/1‑112 (MQ=255)                                      ggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccggc                                          <  3:160572‑M1/149‑39 (MQ=255)                                      ggTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccggc                                          <  5:157356‑M1/149‑39 (MQ=255)                                        tAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccg                                            >  3:115043‑M1/1‑109 (MQ=255)                                        tAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccagggaccgtgccg                                            <  4:115043‑M1/145‑37 (MQ=255)                                                 gCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATgcgg                             <  1:82555/149‑1 (MQ=39)                                                      ggCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacgg                          >  8:326185‑M1/1‑95 (MQ=255)                                                            aaCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGTCGCCGGCCTTGAATGCGGCGCTGcccc                    <  1:3512/148‑1 (MQ=38)                                                             aCAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTgg                 <  4:127632/149‑1 (MQ=39)                                                               aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggta                 <  6:106505‑M1/149‑64 (MQ=255)                                                               aGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTa               <  3:235960/149‑1 (MQ=39)                                                                gCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg              >  8:155275/1‑149 (MQ=39)                                                                gCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAg              <  7:155275/149‑1 (MQ=39)                                                                    aTCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtagga              <  7:326185‑M1/147‑67 (MQ=255)                                                                         cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcggg         <  4:314996‑M1/147‑72 (MQ=255)                                                                         cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg       <  4:121726/147‑1 (MQ=38)                                                                         cgcTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCggg       <  7:139934/147‑1 (MQ=38)                                                                          cctgctCCATTGAAAGGCTGACGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGC‑GCGTAAACCCGCTCCTACCAGCGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGttt    <  4:99872/148‑1 (MQ=38)                                                                           ctgctCCATTGAAAGGTTGAGGATGTCCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTa   <  5:66604/149‑1 (MQ=38)                                                                              ctCCATTGAAAGGTTGAGGATTTCCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAc  <  3:274528/147‑1 (MQ=37)                                                                              ctCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggtaggagcgggtttacc   <  6:230591‑M1/148‑78 (MQ=255)                                                                                     gAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtcc                       >  1:24310‑M1/1‑64 (MQ=255)                                                                                     gAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtcc                       <  2:24310‑M1/121‑58 (MQ=255)                                                                                             gAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTtcgcgggtaaacccgctcctaccaggggcagcgccgcattcaaggccggcacggtccctggt                  >  1:147340‑M1/1‑56 (MQ=255)                                                                                                        ggTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATgcg                              <  2:271275/93‑1 (MQ=25)                                                                                                        ggTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTTCGCGG‑GTAAACCCGCTCCTACCAGGGACCGT‑GCCGGCCTTGAATgcg                              >  1:271275/1‑93 (MQ=25)                                                                                                                                                    |                                                                               GACCCGCCGAGCCAGGAGCCACCGGTGAAGGCTTAAGGGTAGACCACGGCACCGGCGTGAACAGCTGATCTGCGCTGCTCCATTGAAAGGTTGAGGATGACCGGGTGCTTGGCAAGGTGAAGATCTTGCATTGATCGGGCCGGCCTCTCTGC‑G‑GTAAACCCGCTCCTACCAGGGA‑CGT‑GCCGGCCTTGAATGCGGCGCTGCCCCTGGTAGGAGCGGGTTTAC  >  NC_002947/4585882‑4586103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.