New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4711918	50 (0.850)	3 (0.050)	3/242	NT	5.4%	coding (150/2115 nt)	PP_4171	hypothetical protein
	?	NC_002947	= 4711939	57 (1.020)					coding (171/2115 nt)	PP_4171	hypothetical protein

CCGTACCCGCGCCTGCTGTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTC  >  NC_002947/4711787‑4712065                                                                                                                                     |                                                                                                                                                    ccGTACCCGCGCCTGCTGTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCg                                                                                                                                     >  3:98537/1‑148 (MQ=255)    tACCCGCGCCTGCTGTTATTGACCTCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACt                                                                                                                                 <  1:198150/149‑1 (MQ=255)       ccGCGCCTGCTGTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCga                                                                                                                              <  6:378263‑M2/149‑3 (MQ=255)              tgctgTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGaa                                                                                                                       >  1:27907/1‑149 (MQ=255)                ctgTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCgagtacggtcatgctgcccgggacagcggcgg                                                                                                                     <  4:208637‑M1/149‑33 (MQ=255)                ctgTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCgagtacggtcatgctgcccgggacagcggcg                                                                                                                      <  8:253393‑M1/148‑32 (MQ=255)                   ttATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCGGAAACACTCCCCCGCCGCT‑GTCgagtacggtcatgctgcccgggacagcggcgggg                                                                                                                   <  5:267351‑M1/148‑35 (MQ=255)                     aTTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCTGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGAtt                                                                                                                 <  5:282222/148‑1 (MQ=255)                     aTTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGACACAGGTTCTGACCGCAACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTc                                                                                                                >  5:150514/1‑149 (MQ=255)                      ttGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTc                                                                                                                <  5:378263/148‑1 (MQ=255)                       tGACCGCCGAGCAGGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTcgc                                                                                                              >  6:374885/1‑149 (MQ=255)                        gACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTc                                                                                                                                >  4:245747/1‑130 (MQ=255)                        gACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTcgcg                                                                                                             >  2:327113/1‑149 (MQ=255)                         aCCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCgcgc                                                                                                            >  2:289850/1‑149 (MQ=255)                              ccTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCg                                                                                                       >  1:59688/1‑149 (MQ=255)                                      gcggTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGt                                                                                               <  5:374885/149‑1 (MQ=255)                                         gTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACCCGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGa                                                                                             >  3:73993/1‑148 (MQ=255)                                             ggCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATcc                                                                                        <  4:186229/149‑1 (MQ=255)                                                  tGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGaa                                                                                   >  1:347933/1‑149 (MQ=255)                                                    gCCGACGACCTGTTCATCGACAACACCGACCTGGCACAGGTTCTGACGGCCACACGCCTGAATCAATCCCCCTCCTCT‑GTCACGGGCAGCATTACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAAc                                                                                  <  5:376731/148‑1 (MQ=255)                                                           acCAGTTCATCCACAACACCCACCTGCCACAGGTTCTGACCGCCACACCCCTGAAACAATCACCCGCCGCT‑GTCACGGGCAGCATGACCGTACTAGACATCGAACTGATTCGCGACAGAGTAGCCCGTGACATCCCCGAACTCCTgcgc                                                                          >  6:389048/1‑149 (MQ=255)                                                                ttCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTg                                                                       <  6:107311/147‑1 (MQ=255)                                                                  cATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTAc                                                                   >  8:291315/1‑149 (MQ=255)                                                                      gACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCgg                                                                <  2:27907/148‑1 (MQ=255)                                                                        caacaCCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCa                                                             <  2:59688/149‑1 (MQ=255)                                                                            acCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACCGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACGGGGCatgat                                                         >  6:235114/1‑149 (MQ=255)                                                                                      cacaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTAc                                               >  4:262269/1‑149 (MQ=255)                                                                                       acaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCatga                                                          >  6:334272/1‑137 (MQ=255)                                                                                       acaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCatga                                                          <  7:210117/137‑1 (MQ=255)                                                                                       acaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCatga                                                          >  8:210117/1‑137 (MQ=255)                                                                                       acaGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCatga                                                          <  5:334272/137‑1 (MQ=255)                                                                                         aGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGt                                            <  4:73993/149‑1 (MQ=255)                                                                                           gTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGc                                          >  8:352946/1‑149 (MQ=255)                                                                                            ttCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGcc                                         <  6:150514/149‑1 (MQ=255)                                                                                              cTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCgg                                       >  4:110932/1‑149 (MQ=255)                                                                                                gACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCg                                        >  8:165837/1‑146 (MQ=255)                                                                                                gACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCg                                        <  7:165837/146‑1 (MQ=255)                                                                                                 aCCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTaa                                    >  1:187522/1‑149 (MQ=255)                                                                                                  ccGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAAt                                   <  1:327113/149‑1 (MQ=255)                                                                                                   cGCCACACGCCTGAAACAATCCCCCGCCGCTGGTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCgg                                                   >  1:231492/1‑133 (MQ=255)                                                                                                   cGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCgg                                                   <  2:231492/132‑1 (MQ=255)                                                                                                     ccACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTCCGCCTGGTACCGGGCATGAAGATCGGCTACGGTGCCGGTAATCaa                                >  5:67141/1‑149 (MQ=255)                                                                                                         acGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCa                            >  2:343492/1‑149 (MQ=255)                                                                                                                 aaCAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCTTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAAc                    <  1:86046/149‑1 (MQ=255)                                                                                                                  aCAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAAc                    >  3:347509/1‑148 (MQ=255)                                                                                                                      tCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACAt                                                                                          <  8:307023/74‑1 (MQ=255)                                                                                                                      tCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACAt                                                                                          >  7:307023/1‑74 (MQ=255)                                                                                                                       cccccGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTAc                                                                   <  8:19109/96‑1 (MQ=255)                                                                                                                       cccccGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTAc                                                                   >  7:19109/1‑96 (MQ=255)                                                                                                                       cccccGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAAcc                              >  3:129787/1‑133 (MQ=255)                                                                                                                       cccccGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAAcc                              <  4:129787/133‑1 (MQ=255)                                                                                                                        ccccGCCGCT‑GTCCCGGGCAGCATGACCGTACTCgacagcggcgggggagtgtttccggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcggtcaataa              <  5:267351‑M2/148‑115 (MQ=255)                                                                                                                          ccgccgCT‑GTCCCGGGCAGCATGACCGTACTCgacagcggcgggggattgtttcaggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcggtcaataacag           <  4:208637‑M2/149‑118 (MQ=255)                                                                                                                          ccgccgCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGgc           <  1:343492/149‑1 (MQ=255)                                                                                                                           cgccgcT‑GTCCCGGGCAGCATGACCGTACTCgacagcggcgggggattgtttcaggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcggtcaataacag           <  8:253393‑M2/148‑118 (MQ=255)                                                                                                                           cgccgcT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGgca          <  7:291315/149‑1 (MQ=255)                                                                                                                               gcT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCaa      >  1:304936/1‑149 (MQ=255)                                                                                                                                cT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAAc     <  2:304936/149‑1 (MQ=255)                                                                                                                                    tCgagtacggtcatgctgcccgggacagcggcgggggattgtttcaggcgtgtggcggtcagaacctgtggcaggtcggtgttgtcgatgaacaggtcgtcggccacggcctgaccgccgagcagggcggtcaataacagcaggcgcgg  <  6:378263‑M1/149‑148 (MQ=255)                                                                                                                                    tCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGt   <  3:110932/148‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                    CCGTACCCGCGCCTGCTGTTATTGACCGCCCTGCTCGGCGGTCAGGCCGTGGCCGACGACCTGTTCATCGACAACACCGACCTGCCACAGGTTCTGACCGCCACACGCCTGAAACAATCCCCCGCCGCT‑GTCCCGGGCAGCATGACCGTACTCGACAGCGAACTGATTCGCGCCAGCGGTGCCCGTGACATCCCCGAACTGCTGCGCCTGGTACCGGGCATGATGATCGGCTACGGTGCCGGTAATCAACCCACGGTCAACTACCACGGCAGCAACGTC  >  NC_002947/4711787‑4712065

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.