New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5343645 =	45 (0.760)	4 (0.070)	3/248	NT	8.4%	coding (885/1665 nt)	pgi‑II	glucose 6‑phosphate isomerase
	?	NC_002947	5343686 =	NA (NA)					coding (926/1665 nt)	pgi‑II	glucose 6‑phosphate isomerase

ATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCAC  >  NC_002947/5343501‑5343792                                                                                                                                                    |                                                                                                                                                    tgtccagctgctgcaggtgcttggtgatgttgcgcaggtagtggtcgtacggcaggatcgcgtggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctgg                                                                                                                                                    >  7:228462‑M1/148‑149 (MQ=255)      ccaacacGGCCGGTGTTGTCGCGTGC‑GTATGCCCCCAATAAAACATC‑TACCAAAGTGGGTAT‑TGGGGGGGGGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAActgctg                                                                                                                                            <  6:213061/148‑1 (MQ=2)       caacaaGGCCGCTGCTGTAGCGTTCGGTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGt                                                                                                                                           >  5:236564/1‑149 (MQ=34)          caaGGCCGCTGCTGTAGCGTTCGGTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCg                                                                                                                                        >  1:214059/1‑149 (MQ=34)                cGCTGCTGTAGCGTTCGGTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGcc                                                                                                                                   >  5:178997/1‑148 (MQ=37)                        tAGCGTTCGGTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATg                                                                                                                          >  1:210895/1‑149 (MQ=37)                                 gTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCAc                                                                                                                 >  3:130441/1‑149 (MQ=37)                                       cgcgAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGACCTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCa                                                                                                            >  6:163838/1‑149 (MQ=37)                                         cgAACAAAACATCTCCCAATTGTGGT‑AC‑TGGGTGGGGGGCCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGa                                                                                                          <  2:51437/149‑1 (MQ=11)                                            gtcgtacggcaggatcgcgtggctgtttgcgtccgagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaagggtgcggtctGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGAc                                                                                                         >  6:301658‑M1/105‑149 (MQ=255)                                                    acctCCCAATGGGGG‑CCGGGGGGGGGCGGCCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGtt                                                                                                <  4:355041/146‑1 (MQ=11)                                                            aTGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGaa                                                                                       >  3:12449/1‑149 (MQ=34)                                                                ggg‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACCCCAAGGACCAGCACTTCCAGACCGCTCCGTTCGACAAGAACATg                                                                                   >  4:309197/1‑149 (MQ=255)                                                                ggg‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATg                                                                                   >  2:86405/1‑149 (MQ=34)                                                                ggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCa                                                                                                            <  3:56952‑M1/42‑1 (MQ=255)                                                                ggctgtttgcgtcccagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCa                                                                                                            >  4:56952‑M1/85‑126 (MQ=255)                                                                cgtgatatgggtgggCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAAc                                                                                      <  2:122581/141‑1 (MQ=21)                                                                       gggggggggggCCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGt                                                                              <  7:319648/148‑1 (MQ=12)                                                                              cagaagttgccataccacacgcccagcagggccagtagcaccggcatgttcttgtcgaacggtgcggtctGGAACTGCTGTCCGGTGCCTACACCATGGACCAGCACTTCCAGa                                                                                                          <  4:318062‑M1/44‑1 (MQ=255)                                                                                 ggcgCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGcc                                                                    >  2:168127/1‑149 (MQ=32)                                                                                 gccgcTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGcc                                                                    <  5:120413/147‑1 (MQ=17)                                                                                   cgcTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCct                                                                  >  6:22737/1‑149 (MQ=32)                                                                                    gcTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCctg                                                                 >  3:345845/1‑149 (MQ=32)                                                                                         tCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTggg                                                            >  6:50058/1‑149 (MQ=32)                                                                                           gCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCa                                                                                                                  <  3:108314/93‑1 (MQ=33)                                                                                           gCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCa                                                                                                                  >  4:108314/1‑93 (MQ=33)                                                                                               tgGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGtgtg                                                      <  4:130441/149‑1 (MQ=32)                                                                                               tgGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGtgtg                                                      <  1:86405/149‑1 (MQ=32)                                                                                                 gTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGt                                                    <  1:168127/149‑1 (MQ=32)                                                                                                     gCCATCGGCCTGCCGATCGCCGTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATg                                                                                                                          <  7:235578/75‑1 (MQ=21)                                                                                                     gCCATCGGCCTGCCGATCGCCGTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATg                                                                                                                          >  8:235578/1‑75 (MQ=21)                                                                                                       cATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGc                                               >  4:11694/1‑148 (MQ=32)                                                                                                        aTCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTgg                                                             >  4:328680/1‑133 (MQ=32)                                                                                                        aTCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTgg                                                             <  3:328680/133‑1 (MQ=32)                                                                                                              cTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTg                                       <  6:275220/149‑1 (MQ=32)                                                                                                              cTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTg                                       <  5:50058/149‑1 (MQ=32)                                                                                                                 ccGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGa                                    >  6:236162/1‑149 (MQ=32)                                                                                                                       gCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCaaa                              <  4:345845/149‑1 (MQ=32)                                                                                                                           tGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGc                          >  2:252308/1‑149 (MQ=32)                                                                                                                            ggCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGcc                         >  1:309424/1‑149 (MQ=32)                                                                                                                               cATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTgg                                                     <  4:148002/118‑1 (MQ=32)                                                                                                                               cATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTgg                                                     >  3:148002/1‑118 (MQ=32)                                                                                                                               cATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTgg                                      <  7:344287/133‑1 (MQ=32)                                                                                                                               cATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTgg                                      >  8:344287/1‑133 (MQ=32)                                                                                                                                 tCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCCGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCAcgcg                    <  4:209072/149‑1 (MQ=17)                                                                                                                                       cTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTg              <  4:12449/149‑1 (MQ=32)                                                                                                                                          ccAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGcc            <  5:22737/148‑1 (MQ=32)                                                                                                                                          ccAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCg           >  7:171625/1‑149 (MQ=32)                                                                                                                                            aaCTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTgg                                      >  1:250162/1‑120 (MQ=32)                                                                                                                                            aaCTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTgg                                      <  2:250162/120‑1 (MQ=32)                                                                                                                                               ttCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTAc        >  6:308819/1‑147 (MQ=32)                                                                                                                                               ttCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCCACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTAc        <  5:308819/147‑1 (MQ=17)                                                                                                                                                tCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTg                                       <  1:88889/115‑1 (MQ=32)                                                                                                                                                tCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTg                                       >  2:88889/1‑115 (MQ=32)                                                                                                                                                 cAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGAc     <  8:171625/148‑1 (MQ=32)                                                                                                                                                 cAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGAc     <  3:11694/148‑1 (MQ=32)                                                                                                                                                   aGGACCTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCAc  <  5:163838/149‑1 (MQ=17)                                                                                                                                                    |                                                                                                                                                    ATCCAGCAACAAGGCCGCTGCTGTAGCGTTCGGTAT‑CCGCGAAGAAAACATCTTCCCAATGTGGG‑AC‑TGGGTGGGCGGGCGCTACTCGCTGTGGTCGGCCATCGGCCTGCCGATCGCCCTGGCCATCGGCACTGCCAACTTCAAGGAACTGCTGTCCGGCGCCTACACCATGGACCAGCACTTCCAGACCGCACCGTTCGACAAGAACATGCCGGTGCTACTGGCCCTGCTGGGCGTGTGGTATGGCAACTTCTGGGACGCAAACAGCCACGCGATCCTGCCGTACGACCAC  >  NC_002947/5343501‑5343792

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.