| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1499458 | 32 (0.540) | 12 (0.210) | 8/252 | NT | 26.2% | intergenic (+35/‑129) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | = 1499495 | 36 (0.620) | intergenic (+72/‑92) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑T‑CGGGCA‑CG‑CCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACT > NC_002947/1499351‑1499632 | gTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcg < 7:264107‑M2/149‑5 (MQ=255) gACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGGACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCTTGGCACCGGCTTTGCCGGTGttcgcgg > 6:380732‑M2/1‑141 (MQ=255) aaCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcggg > 3:7665‑M2/1‑138 (MQ=255) aaCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcggg > 3:12816‑M2/1‑138 (MQ=255) aaCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCCCGAAACAGGCGCCCCGGTGCATGGCACCGGCGTTGGCCGGGttcgcggg < 4:7665‑M2/146‑9 (MQ=255) cGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgc < 4:327613‑M2/149‑14 (MQ=255) gTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaca > 1:225580‑M2/1‑125 (MQ=255) aTGCGGCCATTCAGAGCCGGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccacagac > 7:85506‑M2/1‑122 (MQ=255) gAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcc > 8:353151‑M2/1‑103 (MQ=255) aaCGACGCCTTGGCACCCCACCAGCACGGCGGCTCCCAACGGGTGGGCGCGGGCGTCCCGGCTAAACAGGCGCGGCGGTGCATGGCACGGGTTTTGCCGGTGTGC‑G‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCggg < 2:301712/147‑1 (MQ=12) gAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGCAAAAGGCGCCGCGGTGCATGGCACCGGCTTTGGCGGTGT‑TAG‑CGGGCACCC‑CCG‑CGCCCCCCGACTGAGTGCCATTAATCGGGCCGAt > 2:279114/1‑149 (MQ=21) aaGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATc < 6:389534/149‑1 (MQ=21) ccTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TAG‑CGGGCA‑CGCCCG‑CTCCCACAGACGGATTGCCATTAAGCGGGCCGATCGc > 7:114347/1‑148 (MQ=21) accacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTTGCCGCGAAACAGGCGCCCCGGTGCATGGCACCGGCGTTTCCGGTGT‑TAG‑CGGGCACCC‑CCG‑CTCCCACAGACTGATTTGCATTTATCGGGCCGATAGCGACAGTGa > 1:20524/1‑149 (MQ=16) ccacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCTAAACAGGCGCCGCGGTGCATGCCACCGGCTTTGCGGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGAc < 3:327613/149‑1 (MQ=21) agccgGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCGTCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGc < 1:279114/149‑1 (MQ=21) gCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TAG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGAATGCCAATTAGCGGGCCTATCGCTAAAGTGACGGCCCGGTTTttgttg > 1:55164/1‑149 (MQ=18) cTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGc < 6:281621/149‑1 (MQ=21) ccAAACGGTGGGAGCGGGCGTGCCCGCGAAACACGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTc > 3:92515/1‑149 (MQ=21) aaaCGGTGGGAGCGGGCGTGCCCGCGAAAAACGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TAG‑CGGGCA‑CGCCCG‑CGCCCACAGACAGAATTCCATTAAGCGGGGCTATGGCGACAGGGACGGCCCCTTTTTTGTTGGCACGc > 2:91235/1‑149 (MQ=12) gAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccacaga > 1:115251‑M2/1‑56 (MQ=255) gCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAt < 3:124719/149‑1 (MQ=25) gggCGTGCCCTCGAAACAGGCGCCGGGGGGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGa < 8:264107/149‑1 (MQ=37) gTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑T‑TGCGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTcc > 4:46093/1‑149 (MQ=37) gCCCGCTAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt < 2:20524/149‑1 (MQ=37) gCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 7:118861/1‑149 (MQ=37) cccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 8:242905/1‑148 (MQ=37) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgtc > 6:257948‑M2/1‑44 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggcttcgttcaggctctgaatggccgcatcacgggcttcagcgttgtc < 5:257948‑M2/148‑105 (MQ=255) ccGCGAAACAGGCGCCGCGGTGCAGGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTa < 3:162970/149‑1 (MQ=37) gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggctt < 8:163576‑M2/103‑62 (MQ=255) gcgAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGttcgcgggcacgcccgctcccaccgtttggcagcctcagtcctgctgtggtgccaaggctt > 7:163576‑M2/1‑42 (MQ=255) gAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCAGTTTTTTCTTGCCTCGCTAACGAATCATGAATCCCTTAGAAc > 4:321986/1‑149 (MQ=25) aaCAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCAGGACTCCCTTAGAACg > 2:30835/1‑148 (MQ=37) ggCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc < 7:242905/149‑1 (MQ=37) cgccgcGGTGCATGGCACCGGCTTTGCGGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCaa < 3:58649/149‑1 (MQ=37) gccgcGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 5:276654/1‑149 (MQ=37) ccgcGGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGc < 4:92515/149‑1 (MQ=37) gcgGTGCATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAg > 8:324725/1‑146 (MQ=37) cATGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTg > 4:271625/1‑148 (MQ=38) aTGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACgg < 4:30067/85‑1 (MQ=17) aTGGCACCGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACgg > 3:30067/1‑85 (MQ=17) aTGGCACCGGCTTGCCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaa < 5:87569/149‑1 (MQ=38) tggcaccGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGaaa < 7:324725/143‑1 (MQ=38) caccGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGt > 8:176221/4‑149 (MQ=38) accGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTc > 2:357189/3‑149 (MQ=38) accGGCTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTc > 6:150716/3‑149 (MQ=38) ccgtcTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTcc < 1:91235/145‑1 (MQ=39) cTTTGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAc < 8:118861/149‑1 (MQ=39) tttGCCGGTGT‑TCG‑CGGGCA‑CGCCCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGAct > 3:352398/1‑149 (MQ=39) | GTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCCACGGCTTTGCCGGTGT‑T‑T‑CGGGCA‑CG‑CCG‑CTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGCAGATCTGAAACGTCCCGACT > NC_002947/1499351‑1499632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |