New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2092024	53 (0.900)	3 (0.050)	3/246	NT	6.1%	coding (1350/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD
	?	NC_002947	= 2092057	42 (0.740)					coding (1383/1680 nt)	deaD	ATP‑dependent DEAD‑box RNA helicase DeaD

GGGTTGCAGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATCTGCTGGGGGCGATCCTCAACGAAGGTGG  >  NC_002947/2091913‑2092200                                                                                                                                                 |                                                                                                                                                gggTTGCAGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTggc                                                                                                                                              <  6:46464‑M2/148‑4 (MQ=255)  ggTTGCAGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTggc                                                                                                                                              <  6:368874‑M2/147‑4 (MQ=255)   gTTGCAGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAg                                                                                                                                           >  3:286225/1‑149 (MQ=255)       cAGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTc                                                                                                                                       <  4:286225/149‑1 (MQ=255)        aGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTcc                                                                                                                                      >  4:319791/1‑149 (MQ=255)        aGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTcc                                                                                                                                      <  4:123840/149‑1 (MQ=255)         gcgcgcGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCt                                                                                                                                     <  7:121693/149‑1 (MQ=255)         gcgcgcGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCt                                                                                                                                     <  5:295105/149‑1 (MQ=255)                  cccTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCgtgg                                                                                                                             <  5:89786/148‑1 (MQ=255)                        cTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGt                                                                                                                      <  1:157977/149‑1 (MQ=255)                                     gcgcAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAc                                                                                                         >  8:143735/1‑149 (MQ=255)                                       gcAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAccg                                                                                                       >  6:112887/1‑149 (MQ=255)                                         aaGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAccgtt                                                                                                     >  6:324782/1‑149 (MQ=255)                                         aaGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAccgtt                                                                                                     <  5:372843/149‑1 (MQ=255)                                            gCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAccgttgcc                                                                                                  >  2:41206/1‑149 (MQ=255)                                             ccaccaATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGa                                                                                                                                   <  1:188931/115‑1 (MQ=255)                                             ccaccaATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGa                                                                                                                                   >  2:188931/1‑115 (MQ=255)                                                 caATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTgg                                                                                             >  5:231089/1‑149 (MQ=255)                                                      gCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCg                                                                                          >  2:119630/1‑147 (MQ=255)                                                          ggCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCa                                                                                                          >  8:162944/1‑127 (MQ=255)                                                          ggCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCa                                                                                                          <  7:162944/127‑1 (MQ=255)                                                          ggCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGcc                                                                                    <  5:324782/149‑1 (MQ=255)                                                            cgcTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCcgc                                                                                  <  7:227224/149‑1 (MQ=255)                                                              cTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCgcgt                                                                                <  3:191461/149‑1 (MQ=255)                                                                 gACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGa                                                                                                                          >  5:203230/1‑104 (MQ=255)                                                                 gACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGa                                                                                                                          <  6:203230/104‑1 (MQ=255)                                                                 gACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCgcgtgcg                                                                             <  7:143735/149‑1 (MQ=255)                                                                    cTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAccgtt                                                                                                     <  3:110111/122‑1 (MQ=255)                                                                    cTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCAccgtt                                                                                                     >  4:110111/1‑122 (MQ=255)                                                                       gcggcgGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCg                                                                       <  5:46464/149‑1 (MQ=255)                                                                         ggcggTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTa                                                                     >  1:188617/1‑149 (MQ=255)                                                                                   cGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTggg                                                           >  4:85577/1‑149 (MQ=255)                                                                                    gTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGt                                                          <  5:368874/149‑1 (MQ=255)                                                                                      gAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGt                                                          >  6:360023/1‑147 (MQ=255)                                                                                      gAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGt                                                          <  5:360023/147‑1 (MQ=255)                                                                                        gcagcCGCTGGTGCCGAGCTTCGCCCCTCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACAGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGccc                                                      <  6:231089/149‑1 (MQ=255)                                                                                            ccGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGa                                                  >  8:104646/1‑149 (MQ=255)                                                                                                       gAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTg                                       <  1:119630/149‑1 (MQ=255)                                                                                                           ttCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTggcgaagctcggcaccagcggctgctcacgctctaccgccgccaggtccagcgcctggccattggtggccttgcgcagcagggccgaagccagggcacgcgcgctgcaac                                   <  6:152128‑M2/149‑111 (MQ=255)                                                                                                             cGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTggcgaagctcggcaccagcggctgctcacgctctaccgccgccaggtccagcgcctggccattggtggccttgcgcagcagggccgaagccagggcacgcgcgctgcaacc                                  <  8:162838‑M2/148‑112 (MQ=255)                                                                                                               ccccGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTggcgaagctcggcaccagcggctgctcacgctctaccgccgccaggtccagcgcctggccattggtggccttgcgcagcagggccgaagccagggcacgcgcgctgcaacccag                               >  5:152128‑M2/1‑35 (MQ=255)                                                                                                               ccccGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTCCCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGaa                                >  2:144688/1‑148 (MQ=255)                                                                                                                 ccGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCCCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATct                             >  7:318378/1‑149 (MQ=255)                                                                                                                 ccGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCCCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATct                             <  8:318378/149‑1 (MQ=255)                                                                                                                  cgcgTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATctg                            <  5:112887/149‑1 (MQ=255)                                                                                                                     gtggtgAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATctgctg                         <  3:319791/149‑1 (MQ=255)                                                                                                                                    aGCGCTGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATCTGCTGGGGGCGATCCTCAAc          <  1:22063/149‑1 (MQ=255)                                                                                                                                        cgGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATCTGCTGGGGGCGATCCTCAACGAAg      <  6:183434/149‑1 (MQ=255)                                                                                                                                            gAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGACGGCATCGCTGCCAAGAATCTGCTGGGGGCGATCCTCAACGAAGGTgg  >  5:7776/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                GGGTTGCAGCGCGCGTGCCCTGGCTTCGGCCCTGCTGCGCAAGGCCACCAATGGCCAGGCGCTGGACCTGGCGGCGGTAGAGCGTGAGCAGCCGCTGGTGCCGAGCTTCGCCCCGCGTGGTGAGCGTACCGAGCGCGGTGAGCGTGGCGAGCGTCCTGATCGTGGTGACCGTGAGCGCCGTGCACCGTTGCCGTTGGCCGAAGGCCGCGTGCGTTGCCGTACCGCCTTGGGTGCCCGTGATGGCATCGCTGCCAAGAATCTGCTGGGGGCGATCCTCAACGAAGGTGG  >  NC_002947/2091913‑2092200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.