New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3946056 = | 50 (0.850) | 3 (0.050) | 3/244 | NT | 5.8% | coding (243/810 nt) | PP_3482 | hypothetical protein |
? | NC_002947 | 3946105 = | 50 (0.890) | coding (194/810 nt) | PP_3482 | hypothetical protein |
CCGTAGAGGTTTTCGAAGCAAGCGCGGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCAACACGGCGCAGTAA > NC_002947/3945958‑3946248 | cacaagaaccaccaccaatggctgggcagccgcgcgttcggcagcgacgtcccccaaccggcctgggaaactgccgtcgatgcacttgctgcactgctGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCcag > 5:103789‑M1/99‑149 (MQ=255) gTTTTCGAAGCAAGCGCGGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTgcag > 1:102615/1‑149 (MQ=255) gTTTTCGAAGCAAGCGCGGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTgcag < 4:207380/149‑1 (MQ=255) gAAGCAAGCGCGGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGt < 6:384108/148‑1 (MQ=255) aagcaagcGCGGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGc < 5:36614/149‑1 (MQ=255) gcgGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGAcag > 3:340501/1‑147 (MQ=255) aTAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGAACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGAACCCGCAACTGGGCGCCACGTACCGCATGCTCGGACAGCAGAGCAGCAAGTGCATCGACGGCAGtt > 4:338597/1‑148 (MQ=255) aGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTc > 7:11114/1‑148 (MQ=255) aGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTc < 8:11114/148‑1 (MQ=255) ggCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTccc < 8:222785/149‑1 (MQ=255) gCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTcc > 8:153944/1‑147 (MQ=255) gCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTcc > 5:133327/1‑147 (MQ=255) gTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAgg > 7:137738/1‑149 (MQ=255) ggcagcgacgtcccccaaccggcctgggaaactgccgtcgatgcacttgctgcactgctGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCca > 1:241556‑M1/60‑109 (MQ=255) ggcagcgacgtcccccaaccggcctgggaaactgccgtcgatgcacttgctgcactgctGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCca < 2:241556‑M1/50‑1 (MQ=255) aGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCgg < 7:153944/149‑1 (MQ=255) cTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGACGGtt > 8:167680/1‑149 (MQ=255) gcgAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACTGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTgtg < 6:56943/149‑3 (MQ=255) gTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGt < 1:271294/149‑1 (MQ=255) ggCCGAAGGCGTCACTCCACGCCACCAGGCAGAACCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCg < 8:331203/149‑1 (MQ=255) ccGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGGTTCACAGGCCGGTTCGGGGACGTCGCt > 8:98284/1‑149 (MQ=255) cGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGt > 1:166500/1‑98 (MQ=255) cGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGt < 2:166500/98‑1 (MQ=255) gATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGCGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGc < 8:140107/149‑1 (MQ=255) aTGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGcc < 2:102615/149‑1 (MQ=255) cGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCca > 1:297351/1‑87 (MQ=255) cGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCca < 2:297351/87‑1 (MQ=255) tCCAGGGCACCAGGCAGAAGCGGCTATAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCgg > 2:338751/1‑149 (MQ=255) cAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCt > 7:345810/1‑149 (MQ=255) cAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCt > 5:155916/1‑149 (MQ=255) gggCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGccg > 1:7928/1‑146 (MQ=255) gggCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGccg < 2:7928/148‑3 (MQ=255) ccAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGc > 5:159425/1‑149 (MQ=255) aGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATtgg < 7:98284/149‑1 (MQ=255) gCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATtggtgg < 7:272055/148‑1 (MQ=255) gCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATtggtgg > 8:272055/1‑148 (MQ=255) ctggccgagcatgcggtacgtggcgcccagttgcgggtgctgctgtcggccAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTtgtg > 5:103789‑M2/52‑149 (MQ=255) tggccgagcatgcggtacgtggcgcccagttgcgggtgctgctgtcggccAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGcc > 1:241556‑M2/51‑109 (MQ=255) tggccgagcatgcggtacgtggcgcccagttgcgggtgctgctgtcggccAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGcc < 2:241556‑M2/59‑1 (MQ=255) gggCCGCCAGCAGCACCCGCAACTGGGCGCCACGGACCGCATGCTGGGCCATGAGTGCAGCAAGTGCATCGTCGGCAGTTTCCCCGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGc < 7:167680/149‑1 (MQ=255) CCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAg < 2:126951‑M1/149‑1 (MQ=255) ACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGa > 8:345810‑M1/1‑149 (MQ=255) agcaCCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAg < 1:126951/149‑1 (MQ=255) agcaCCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACAGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAg < 4:340501/149‑1 (MQ=255) ccGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGtt > 6:241367/1‑126 (MQ=255) ccGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGtt < 5:241367/126‑1 (MQ=255) ccGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGa < 6:159425/149‑1 (MQ=255) ccGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGa > 3:322973/1‑149 (MQ=255) tGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTc > 6:168203/1‑149 (MQ=255) gcgcCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGgc > 3:31058/1‑149 (MQ=255) aCGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGc > 7:3927/1‑131 (MQ=255) aCGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGc < 8:3927/131‑1 (MQ=255) aCGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGcc > 6:224294/1‑147 (MQ=255) aCGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGcc < 5:224294/147‑1 (MQ=255) cGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCaa > 7:21614/1‑149 (MQ=255) cGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCaa < 8:21614/149‑1 (MQ=255) aCCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCAacac > 6:362480/1‑149 (MQ=255) ccGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGCTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCAACACg > 5:255538/1‑149 (MQ=255) cGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGccc < 6:245004/142‑1 (MQ=255) cGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGccc > 5:245004/1‑142 (MQ=255) cATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCAACACGgcg > 1:172413/1‑149 (MQ=255) cggccAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCAACACGGCGCAGTaa > 8:202707‑M2/6‑149 (MQ=255) | CCGTAGAGGTTTTCGAAGCAAGCGCGGGCATAGGCGTCCAGCTCGCGAGGGTGGCCGATGGCGTCACTCCAGGGCACCAGGCAGAAGCGGCTGTAACGGGCCGACAGCAGCACCCGCAACTGGGCGCCACGTACCGCATGCTCGGCCAGCAGTGCAGCAAGTGCATCGACGGCAGTTTCCCAGGCCGGTTGGGGGACGTCGCTGCCGAACGCGCGGCTGCCCAGCCATTGGTGGTGGTTCTTGTGCCAGCGACCCAGGCCGACACCCTCGGCGCCCAACACGGCGCAGTAA > NC_002947/3945958‑3946248 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |