| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5288394 = | 24 (0.410) | 5 (0.110) | 4/196 | NT | 20.7% | intergenic (‑75/+109) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B |
| ? | NC_002947 | 5288488 = | 20 (0.440) | intergenic (‑169/+15) | PP_4660/mdaB | LysR family transcriptional regulator/drug activity modulator B | |||||
TGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGT > NC_002947/5288342‑5288630 | tgCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTGCCACAACTACTGGAAAAGCCTTGAAACCTGCGTTATAACGGGGGGAGCGGGGAAGCCCGCGCATGGGCCgg > 3:249104/1‑148 (MQ=255) gATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTAATGCAAAGTCCTTGAAACCTTCGTTATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGa > 1:77896/1‑148 (MQ=255) ttGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTTCCCGCTACCACAAATACATCAAAGTACATGAAACCTGCGTAAAAACTGTGGGAGCGGGCAAGCCCGCGAAAAGGCCCGGACAGACATAAAATTaaaggt > 8:104484/1‑144 (MQ=37) gAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCATGCCCGCGACCACAAGTAATGCAAAGTACGTGAAACCGGCGTAATACCGGTGGGGGCCGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACAGGGCCGTg > 2:295927/1‑149 (MQ=255) gTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACGGGAAAGTCCGTGAAACCGGCGTAATACCGGTGGGAGCGGGGAAGCCCGCGCAGAGGCCGGGACAGACATAAAATTACtgt > 3:319896/1‑135 (MQ=38) gcggcgCCTGTATGGGCCTCTTCGCGGGCTGGCCCGCTCCCACACGTACTGCAAATTCCTTTAAACCTGCGTAATACCTGGGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGt < 3:112584/149‑1 (MQ=38) cgcCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAATGTCCTTGAAACCTGCTTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAg < 1:263048/149‑1 (MQ=255) tATGGGCCTCTTCGCGGGATTGCCCGCTCCAACAATTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATgg‑g < 3:63229/148‑1 (MQ=255) gggCCTCTTCGCGGGCTTGCCCGCTCCCACTAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACtgt > 1:34439/1‑117 (MQ=255) CTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATaa > 7:104484‑M1/1‑149 (MQ=255) CGCGGGCTTGCCCGCTCCCACCAGTACTCCACAGTCCGTGAAACCTGCGTAATCCCTGGGGGCGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTg > 1:295927‑M1/1‑148 (MQ=255) CGCGGGCTTGCCCGCTCCCACAATTACTGCAAAGTCCTTTAAACCTGCTTAATACCTGTGGGATCGGGAAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTg > 2:77896‑M1/1‑148 (MQ=255) GCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCtt > 6:96872‑M1/1‑124 (MQ=255) GCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCtt < 5:96872‑M1/124‑1 (MQ=255) cgggcttgcccgctcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGcc > 2:356685‑M2/85‑148 (MQ=255) gttgcCCCGATCCCACACTAACTGCAAAGTCCTTCAACCCTGCTTATTCCCTGCGGGGGCGTGCAAGCCCGCTAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAAcg > 4:249104‑M1/6‑149 (MQ=255) TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGc < 2:292020‑M1/142‑1 (MQ=255) TTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGc > 1:292020‑M1/1‑142 (MQ=255) CCGCTCCCACAAGTAATGCAAAGTCATTGAAACCTGCTTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCAGGTACAGACATAAAATTACTGTGCCTTGCCAAACACATTGTCCAGATGG‑GCCTCATAATCTgccaacgcatccg < 2:249093‑M1/149‑6 (MQ=255) tcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑Gc > 8:299967‑M2/72‑122 (MQ=255) tcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑Gc < 7:299967‑M2/51‑1 (MQ=255) tcccacaggtattacgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGca > 7:254778‑M2/72‑148 (MQ=255) ACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTg < 3:217726‑M1/129‑1 (MQ=255) ACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTg > 4:217726‑M1/1‑129 (MQ=255) AAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACCCCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCgg < 5:4832‑M1/149‑1 (MQ=255) aGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTAc > 8:242808/1‑83 (MQ=255) aGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTAc < 7:242808/83‑1 (MQ=255) cTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCt > 4:325554/1‑149 (MQ=255) tGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCtt > 5:283794/1‑149 (MQ=255) gCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTtc < 6:4832/149‑1 (MQ=255) cgcaggtttcaaggactttgcagtacttgtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTtca < 1:356685‑M2/92‑1 (MQ=255) cAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGt > 6:58673/1‑98 (MQ=255) cAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGt < 5:58673/98‑1 (MQ=255) aCCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGc < 3:325554/149‑1 (MQ=255) tGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAg > 6:1636/1‑149 (MQ=255) aaTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCa > 1:164255/1‑143 (MQ=255) aaTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCa < 2:164255/143‑1 (MQ=255) aaTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAgg > 6:279909/1‑149 (MQ=255) tACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTc > 4:149965/1‑149 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACACCGCCGGCACATCCGGGCGCTtca > 6:17031/1‑124 (MQ=255) ccTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACACCGCCGGCACATCCGGGCGCTtca < 5:17031/124‑1 (MQ=255) gtgggagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAg > 8:357356‑M2/30‑149 (MQ=255) ttcgcgggcttgcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGcc > 6:271414‑M2/27‑149 (MQ=255) gagcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCGTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCg > 8:83065‑M2/26‑149 (MQ=255) agcgggcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCgg > 7:243519‑M2/25‑149 (MQ=255) gcaagcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATg > 7:178964‑M2/20‑149 (MQ=255) gcccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCa < 5:279909‑M2/134‑1 (MQ=255) cccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATa > 4:84745‑M2/15‑71 (MQ=255) cccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATa < 3:84745‑M2/57‑1 (MQ=255) ccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGGCGACTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAg > 1:303099‑M2/14‑149 (MQ=255) ccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAg < 4:245488‑M2/112‑1 (MQ=255) ccgcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAg > 3:245488‑M2/14‑125 (MQ=255) gcgaagaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGaa > 1:240805‑M2/12‑149 (MQ=255) agaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTgg < 8:243519‑M2/142‑1 (MQ=255) gaggccGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGt < 5:1636‑M2/143‑1 (MQ=255) | TGCAAGGATTAGATAACCGCTTGTCGAGGCCAAGTCCAGCGGCGCCTGTATGGGCCTCTTCGCGGGCTTGCCCGCTCCCACAAGTACTGCAAAGTCCTTGAAACCTGCGTAATACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTACAGACATAAAATTACTGTGCCTTGCCAAACACCTTGTCCAGATGG‑GCCTCATAAGCTGCCAACGCCGCCGGCACATCCGGGCGCTTCATCACATCCACAGCCAGGAAGGTCGGCAGGCCGGTCATGCCCAGGAACTGGT > NC_002947/5288342‑5288630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |